Calcium in PDB 9gsh: Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State

All present enzymatic activity of Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State:
7.2.2.10;

The structure of Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Calcium atom in the Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State (pdb code 9gsh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State, PDB code: 9gsh:

Calcium binding site 1 out of 1 in the Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1302 b:17.9 occ:1.00 OD2 A:ASP873 2.2 24.3 1.0 OE1 A:GLU412 2.4 28.0 1.0 O A:VAL410 2.4 25.5 1.0 OD1 A:ASN869 2.5 24.5 1.0 O A:VAL407 2.8 21.2 1.0 O A:VAL408 3.0 22.9 1.0 CG A:ASP873 3.4 28.3 1.0 CD A:GLU412 3.5 31.4 1.0 C A:VAL408 3.6 18.1 1.0 C A:VAL410 3.6 22.7 1.0 CG A:ASN869 3.6 21.1 1.0 CA A:VAL408 3.8 17.5 1.0 C A:VAL407 3.9 18.9 1.0 OE2 A:GLU412 4.1 31.7 1.0 OD1 A:ASP873 4.1 29.9 1.0 N A:VAL410 4.2 22.9 1.0 CE A:MET872 4.3 16.2 1.0 N A:VAL408 4.3 19.6 1.0 N A:GLU412 4.4 27.1 1.0 CA A:VAL410 4.4 20.8 1.0 CB A:ASP873 4.5 24.0 1.0 CB A:ASN869 4.5 17.6 1.0 N A:PRO411 4.5 25.1 1.0 ND2 A:ASN869 4.6 20.6 1.0 N A:ALA409 4.6 19.1 1.0 CA A:PRO411 4.6 25.9 1.0 CG A:GLU412 4.7 28.9 1.0 C A:ALA409 4.7 21.8 1.0 CB A:VAL410 4.9 22.6 1.0

D.Vinayagam, S.Raunser, O.Sistel, U.Schulte, C.E.Constantin, D.Prumbaum, G.Zolles, B.Fakler. Cryo-Em Structure of Pmca-Nptn Complex Captured in E1-Ca-Atp State To Be Published.