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Calcium in PDB 9j1a: Structure of Cona Without Ligand

Protein crystallography data

The structure of Structure of Cona Without Ligand, PDB code: 9j1a was solved by L.Li, G.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.19 / 1.48
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 62.239, 87.413, 88.959, 90, 90, 90
R / Rfree (%) 18.4 / 21.3

Other elements in 9j1a:

The structure of Structure of Cona Without Ligand also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Cona Without Ligand (pdb code 9j1a). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Cona Without Ligand, PDB code: 9j1a:

Calcium binding site 1 out of 1 in 9j1a

Go back to Calcium Binding Sites List in 9j1a
Calcium binding site 1 out of 1 in the Structure of Cona Without Ligand


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Cona Without Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:11.0
occ:1.00
OD1 A:ASN14 2.4 14.9 1.0
O A:TYR12 2.4 11.7 1.0
OD2 A:ASP19 2.4 13.7 1.0
O A:HOH540 2.4 12.0 1.0
O A:HOH576 2.4 12.7 1.0
OD1 A:ASP10 2.4 13.0 1.0
OD2 A:ASP10 2.5 10.9 1.0
CG A:ASP10 2.8 12.0 1.0
CG A:ASP19 3.5 14.6 1.0
CG A:ASN14 3.5 14.8 1.0
C A:TYR12 3.6 12.3 1.0
OD1 A:ASP19 3.9 12.8 1.0
N A:ASN14 4.0 13.2 1.0
MN A:MN402 4.2 10.4 1.0
CB A:ASN14 4.2 14.5 1.0
CB A:ASP10 4.3 11.5 1.0
O A:HOH546 4.4 12.9 1.0
CA A:TYR12 4.4 11.7 1.0
N A:TYR12 4.4 11.4 1.0
N A:PRO13 4.5 13.2 1.0
ND2 A:ASN14 4.6 14.1 1.0
CE1 A:HIS24 4.6 10.4 1.0
CA A:PRO13 4.6 15.1 1.0
CB A:TYR12 4.6 11.9 1.0
C A:PRO13 4.7 16.5 1.0
CA A:ASN14 4.7 13.3 1.0
O A:ASP208 4.7 10.8 1.0
OD1 A:ASP208 4.7 15.8 1.0
CB A:ASP19 4.8 13.8 1.0
CB A:ARG228 4.8 13.3 1.0
O A:ARG228 4.8 13.6 1.0
CA A:ARG228 4.9 12.2 1.0
NE2 A:HIS24 4.9 12.0 1.0

Reference:

L.Li, G.Chen. Structure of Cona Without Ligand To Be Published.
Page generated: Thu Jul 10 09:55:43 2025

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