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Calcium in PDB 9kyf: Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb

Enzymatic activity of Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb

All present enzymatic activity of Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb:
3.5.1.135;

Protein crystallography data

The structure of Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb, PDB code: 9kyf was solved by W.T.Guo, B.X.Wu, C.Y.Meng, Y.Wen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.40 / 1.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.306, 30.55, 61.949, 90, 93.9, 90
R / Rfree (%) 20.1 / 24.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb (pdb code 9kyf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb, PDB code: 9kyf:

Calcium binding site 1 out of 1 in 9kyf

Go back to Calcium Binding Sites List in 9kyf
Calcium binding site 1 out of 1 in the Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:18.5
occ:1.00
O B:GLU45 2.2 20.8 1.0
O A:HOH386 2.3 25.1 1.0
OD2 A:ASP87 2.3 16.8 1.0
O B:HOH354 2.4 26.9 1.0
O A:HOH383 2.5 18.8 1.0
O B:HOH208 2.6 30.5 1.0
CG A:ASP87 3.4 13.8 1.0
C B:GLU45 3.4 20.7 1.0
OD1 A:ASP87 3.7 17.4 1.0
CA B:GLU45 4.0 17.7 1.0
O A:HOH348 4.1 24.5 1.0
O B:HOH316 4.2 34.2 1.0
N B:ASP46 4.5 22.7 1.0
O A:LYS83 4.5 13.4 1.0
CB B:GLU45 4.6 18.6 1.0
CB A:ASP87 4.7 14.9 1.0
CB A:LYS83 4.7 11.6 1.0
CA B:ASP46 4.7 22.8 1.0
O B:PHE44 4.9 20.5 1.0

Reference:

W.T.Guo, B.X.Wu, C.Y.Meng, Y.Wen. Crystal Structure of E.Coli AC4C Amidohydrolase Yqfb To Be Published.
Page generated: Tue Aug 26 19:36:59 2025

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