Atomistry » Calcium » PDB 1cxk-1dds » 1daf
Atomistry »
  Calcium »
    PDB 1cxk-1dds »
      1daf »

Calcium in PDB 1daf: Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium

Enzymatic activity of Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium

All present enzymatic activity of Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium:
6.3.3.3;

Protein crystallography data

The structure of Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium, PDB code: 1daf was solved by W.Huang, J.Jia, G.Schneider, Y.Lindqvist, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.200, 49.200, 61.800, 90.00, 107.10, 90.00
R / Rfree (%) 17.2 / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium (pdb code 1daf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium, PDB code: 1daf:

Calcium binding site 1 out of 1 in 1daf

Go back to Calcium Binding Sites List in 1daf
Calcium binding site 1 out of 1 in the Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Dethiobiotin Synthetase Complexed with 7-(Carboxyamino)-8- Amino-Nonanoic Acid, Adp, and Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca227

b:23.2
occ:1.00
O A:HOH363 2.2 27.3 1.0
O1A A:ADP226 2.3 17.4 1.0
OD1 A:ASP54 2.5 23.3 1.0
O A:HOH374 2.5 35.5 1.0
O A:HOH380 2.6 26.7 1.0
O A:HOH370 2.7 34.1 1.0
OD2 A:ASP54 2.8 24.7 1.0
CG A:ASP54 3.0 21.6 1.0
PA A:ADP226 3.7 17.4 1.0
OE2 A:GLU12 4.2 38.8 1.0
O A:HOH369 4.2 34.5 1.0
O3A A:ADP226 4.3 20.2 1.0
O3B A:ADP226 4.3 17.6 1.0
CB A:ASP54 4.5 21.4 1.0
OG1 A:THR16 4.5 14.2 1.0
O5' A:ADP226 4.5 19.6 1.0
C5' A:ADP226 4.5 19.0 1.0
OG A:SER53 4.6 28.1 1.0
O2B A:ADP226 4.6 16.3 1.0
O A:HOH285 4.6 23.3 1.0
O A:HOH367 4.7 24.1 1.0
PB A:ADP226 4.7 18.8 1.0
O2A A:ADP226 4.7 17.8 1.0

Reference:

W.Huang, J.Jia, K.J.Gibson, W.S.Taylor, A.R.Rendina, G.Schneider, Y.Lindqvist. Mechanism of An Atp-Dependent Carboxylase, Dethiobiotin Synthetase, Based on Crystallographic Studies of Complexes with Substrates and A Reaction Intermediate. Biochemistry V. 34 10985 1995.
ISSN: ISSN 0006-2960
PubMed: 7669756
DOI: 10.1021/BI00035A004
Page generated: Thu Jul 11 07:27:15 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy