Calcium in PDB 1dm5: Annexin XII E105K Homohexamer Crystal Structure
Protein crystallography data
The structure of Annexin XII E105K Homohexamer Crystal Structure, PDB code: 1dm5
was solved by
J.P.Cartailler,
H.T.Haigler,
H.Luecke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
10.00 /
1.93
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
68.943,
162.544,
188.798,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21.5 /
26.3
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Calcium atom in the Annexin XII E105K Homohexamer Crystal Structure
(pdb code 1dm5). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the
Annexin XII E105K Homohexamer Crystal Structure, PDB code: 1dm5:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 1 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1121
b:68.6
occ:0.50
|
CE
|
E:LYS68
|
2.5
|
25.9
|
1.0
|
|
OE2
|
A:GLU142
|
2.7
|
22.4
|
1.0
|
|
OG1
|
A:THR103
|
3.0
|
39.5
|
1.0
|
|
NZ
|
E:LYS68
|
3.2
|
38.4
|
1.0
|
|
CD
|
E:LYS68
|
3.2
|
24.4
|
1.0
|
|
O
|
A:MET98
|
3.2
|
32.9
|
1.0
|
|
CD
|
A:GLU142
|
3.4
|
31.5
|
1.0
|
|
O
|
A:GLY102
|
3.4
|
37.8
|
1.0
|
|
C
|
A:GLY102
|
3.5
|
44.4
|
1.0
|
|
O
|
A:HOH1240
|
3.7
|
45.9
|
1.0
|
|
CG
|
A:GLU142
|
3.8
|
29.8
|
1.0
|
|
N
|
A:THR103
|
3.9
|
53.4
|
1.0
|
|
CA
|
A:GLY102
|
3.9
|
45.3
|
1.0
|
|
CG
|
E:LYS68
|
4.1
|
22.8
|
1.0
|
|
CB
|
A:THR103
|
4.2
|
38.2
|
1.0
|
|
CA
|
A:THR103
|
4.2
|
38.8
|
1.0
|
|
CB
|
A:GLU142
|
4.2
|
25.9
|
1.0
|
|
OE1
|
A:GLU142
|
4.3
|
33.8
|
1.0
|
|
N
|
A:GLY102
|
4.3
|
52.5
|
1.0
|
|
C
|
A:MET98
|
4.3
|
32.2
|
1.0
|
|
O
|
A:GLY100
|
4.6
|
43.1
|
1.0
|
|
CA
|
A:GLU142
|
4.8
|
23.1
|
1.0
|
|
CG2
|
A:THR103
|
4.9
|
39.4
|
1.0
|
|
O
|
A:GLU142
|
5.0
|
28.8
|
1.0
|
|
CA
|
A:MET98
|
5.0
|
32.1
|
1.0
|
|
Calcium binding site 2 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 2 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1131
b:60.4
occ:1.00
|
OE2
|
A:GLU226
|
2.3
|
32.7
|
1.0
|
|
O
|
A:HOH1255
|
2.4
|
48.3
|
1.0
|
|
O
|
A:GLY186
|
2.5
|
38.4
|
1.0
|
|
O
|
A:GLY181
|
2.6
|
33.4
|
1.0
|
|
O
|
A:GLN184
|
2.9
|
33.7
|
1.0
|
|
CD
|
A:GLU226
|
3.1
|
29.6
|
1.0
|
|
OE1
|
A:GLU226
|
3.2
|
31.1
|
1.0
|
|
C
|
A:GLY181
|
3.3
|
32.5
|
1.0
|
|
O
|
A:ILE185
|
3.3
|
34.7
|
1.0
|
|
C
|
A:GLY186
|
3.4
|
37.9
|
1.0
|
|
OG1
|
A:THR187
|
3.5
|
34.3
|
1.0
|
|
CA
|
A:GLY181
|
3.7
|
31.8
|
1.0
|
|
C
|
A:ILE185
|
3.7
|
61.3
|
1.0
|
|
C
|
A:GLN184
|
3.8
|
35.5
|
1.0
|
|
CG
|
A:GLN184
|
4.1
|
37.5
|
1.0
|
|
N
|
A:GLY186
|
4.2
|
27.9
|
1.0
|
|
CA
|
A:THR187
|
4.3
|
31.5
|
1.0
|
|
N
|
A:THR187
|
4.3
|
28.2
|
1.0
|
|
CA
|
A:GLY186
|
4.3
|
36.5
|
1.0
|
|
N
|
A:GLU182
|
4.4
|
38.1
|
1.0
|
|
CG
|
A:GLU226
|
4.4
|
27.7
|
1.0
|
|
N
|
A:ILE185
|
4.5
|
44.6
|
1.0
|
|
CA
|
A:ILE185
|
4.5
|
61.4
|
1.0
|
|
CB
|
A:THR187
|
4.5
|
28.9
|
1.0
|
|
O
|
A:ALA180
|
4.6
|
22.8
|
1.0
|
|
N
|
A:GLN184
|
4.7
|
35.8
|
1.0
|
|
CA
|
A:GLN184
|
4.7
|
35.2
|
1.0
|
|
N
|
A:GLY181
|
4.7
|
24.8
|
1.0
|
|
CA
|
A:GLU182
|
4.9
|
32.9
|
1.0
|
|
CD
|
A:GLN184
|
5.0
|
38.8
|
1.0
|
|
CB
|
A:GLN184
|
5.0
|
36.6
|
1.0
|
|
Calcium binding site 3 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 3 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1122
b:59.9
occ:0.50
|
O
|
B:MET98
|
2.5
|
40.6
|
1.0
|
|
O
|
B:GLY102
|
2.9
|
38.4
|
1.0
|
|
O
|
B:GLY100
|
3.0
|
50.2
|
1.0
|
|
OE2
|
B:GLU142
|
3.2
|
27.5
|
1.0
|
|
N
|
B:GLY102
|
3.5
|
38.2
|
1.0
|
|
C
|
B:GLY102
|
3.6
|
34.6
|
1.0
|
|
C
|
B:MET98
|
3.6
|
32.1
|
1.0
|
|
CD
|
B:GLU142
|
3.8
|
23.9
|
1.0
|
|
CA
|
B:GLY102
|
3.9
|
36.3
|
1.0
|
|
C
|
B:GLY100
|
3.9
|
35.0
|
1.0
|
|
CA
|
B:LYS99
|
4.2
|
25.6
|
1.0
|
|
OE1
|
B:GLU142
|
4.2
|
26.7
|
1.0
|
|
N
|
B:GLY100
|
4.3
|
39.8
|
1.0
|
|
C
|
B:LEU101
|
4.3
|
40.6
|
1.0
|
|
C
|
B:LYS99
|
4.3
|
24.6
|
1.0
|
|
N
|
B:LYS99
|
4.3
|
34.2
|
1.0
|
|
CE
|
D:LYS68
|
4.4
|
25.4
|
1.0
|
|
CG
|
B:GLU142
|
4.6
|
25.3
|
1.0
|
|
OG1
|
B:THR103
|
4.6
|
39.7
|
1.0
|
|
CA
|
B:LEU101
|
4.6
|
40.4
|
1.0
|
|
N
|
B:LEU101
|
4.6
|
41.1
|
1.0
|
|
N
|
B:THR103
|
4.7
|
59.0
|
1.0
|
|
CA
|
B:MET98
|
4.7
|
32.0
|
1.0
|
|
CA
|
B:GLY100
|
4.8
|
34.6
|
1.0
|
|
O
|
B:LYS99
|
4.8
|
44.7
|
1.0
|
|
O
|
B:HOH1256
|
4.9
|
43.2
|
1.0
|
|
OE1
|
D:GLU92
|
4.9
|
40.0
|
1.0
|
|
O
|
B:HOH1296
|
4.9
|
51.4
|
1.0
|
|
Calcium binding site 4 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 4 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1132
b:66.8
occ:1.00
|
OE2
|
B:GLU226
|
2.5
|
37.8
|
1.0
|
|
O
|
B:GLY181
|
2.6
|
37.5
|
1.0
|
|
O
|
B:GLN184
|
2.6
|
31.7
|
1.0
|
|
O
|
B:GLY186
|
3.0
|
47.8
|
1.0
|
|
OE1
|
B:GLU226
|
3.2
|
37.5
|
1.0
|
|
CD
|
B:GLU226
|
3.2
|
27.5
|
1.0
|
|
O
|
B:ILE185
|
3.3
|
47.1
|
1.0
|
|
C
|
B:GLY181
|
3.3
|
32.2
|
1.0
|
|
C
|
B:GLN184
|
3.6
|
42.4
|
1.0
|
|
C
|
B:ILE185
|
3.8
|
67.2
|
1.0
|
|
CA
|
B:GLY181
|
3.9
|
32.3
|
1.0
|
|
C
|
B:GLY186
|
4.0
|
51.3
|
1.0
|
|
OG1
|
B:THR187
|
4.0
|
28.4
|
1.0
|
|
N
|
B:GLU182
|
4.3
|
32.0
|
1.0
|
|
CA
|
B:ILE185
|
4.3
|
68.3
|
1.0
|
|
N
|
B:ILE185
|
4.3
|
50.7
|
1.0
|
|
N
|
B:GLY186
|
4.5
|
39.0
|
1.0
|
|
CG
|
B:GLN184
|
4.5
|
42.7
|
1.0
|
|
N
|
B:GLN184
|
4.6
|
54.9
|
1.0
|
|
CA
|
B:GLN184
|
4.6
|
42.6
|
1.0
|
|
CA
|
B:GLU182
|
4.7
|
41.2
|
1.0
|
|
CG
|
B:GLU226
|
4.7
|
28.9
|
1.0
|
|
CA
|
B:GLY186
|
4.7
|
51.3
|
1.0
|
|
O
|
B:GLU182
|
4.8
|
50.2
|
1.0
|
|
C
|
B:GLU182
|
4.8
|
41.7
|
1.0
|
|
N
|
B:THR187
|
4.8
|
53.6
|
1.0
|
|
CA
|
B:THR187
|
4.9
|
39.4
|
1.0
|
|
CB
|
B:THR187
|
5.0
|
38.4
|
1.0
|
|
N
|
B:GLY181
|
5.0
|
29.8
|
1.0
|
|
O
|
B:ALA180
|
5.0
|
31.4
|
1.0
|
|
Calcium binding site 5 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 5 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1123
b:30.9
occ:0.50
|
O
|
C:MET98
|
2.2
|
26.6
|
1.0
|
|
O
|
C:HOH1240
|
2.2
|
22.8
|
0.5
|
|
O
|
C:GLY100
|
2.3
|
27.5
|
1.0
|
|
O
|
C:GLY102
|
2.4
|
21.0
|
1.0
|
|
O
|
C:HOH1255
|
2.6
|
30.8
|
1.0
|
|
C
|
C:MET98
|
3.1
|
28.9
|
1.0
|
|
C
|
C:GLY102
|
3.4
|
39.4
|
1.0
|
|
C
|
C:GLY100
|
3.5
|
47.0
|
1.0
|
|
N
|
C:GLY102
|
3.6
|
47.1
|
1.0
|
|
N
|
C:GLY100
|
3.6
|
34.2
|
1.0
|
|
CA
|
C:LYS99
|
3.7
|
34.2
|
1.0
|
|
N
|
C:LYS99
|
3.7
|
28.0
|
1.0
|
|
C
|
C:LYS99
|
3.7
|
33.4
|
1.0
|
|
OE2
|
C:GLU142
|
3.8
|
24.2
|
1.0
|
|
CA
|
C:GLY102
|
3.9
|
40.0
|
1.0
|
|
O
|
F:HOH1197
|
3.9
|
35.4
|
1.0
|
|
O
|
C:HOH1254
|
4.0
|
37.6
|
1.0
|
|
CA
|
C:MET98
|
4.2
|
29.4
|
1.0
|
|
CA
|
C:GLY100
|
4.2
|
48.1
|
1.0
|
|
C
|
C:LEU101
|
4.3
|
33.8
|
1.0
|
|
CD
|
C:GLU142
|
4.3
|
21.6
|
1.0
|
|
N
|
C:THR103
|
4.4
|
55.1
|
1.0
|
|
O
|
C:LYS99
|
4.4
|
46.0
|
1.0
|
|
N
|
C:LEU101
|
4.5
|
27.6
|
1.0
|
|
OG1
|
C:THR103
|
4.5
|
27.3
|
1.0
|
|
CA
|
C:LEU101
|
4.7
|
32.9
|
1.0
|
|
CA
|
C:THR103
|
4.7
|
32.7
|
1.0
|
|
OE1
|
C:GLU142
|
4.7
|
34.7
|
1.0
|
|
CG
|
C:GLU142
|
4.9
|
20.0
|
1.0
|
|
CE
|
F:LYS68
|
5.0
|
18.7
|
1.0
|
|
O
|
C:LEU101
|
5.0
|
34.0
|
1.0
|
|
Calcium binding site 6 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 6 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1133
b:44.2
occ:1.00
|
O
|
C:GLY186
|
2.1
|
17.1
|
1.0
|
|
O
|
C:GLN184
|
2.3
|
28.2
|
1.0
|
|
O
|
C:GLY181
|
2.4
|
18.9
|
1.0
|
|
OE2
|
C:GLU226
|
2.7
|
24.8
|
1.0
|
|
O
|
C:ILE185
|
2.9
|
38.7
|
1.0
|
|
C
|
C:GLN184
|
3.2
|
38.4
|
1.0
|
|
C
|
C:GLY186
|
3.2
|
31.7
|
1.0
|
|
C
|
C:ILE185
|
3.3
|
55.0
|
1.0
|
|
C
|
C:GLY181
|
3.3
|
30.2
|
1.0
|
|
CG
|
C:GLN184
|
3.6
|
33.8
|
1.0
|
|
CD
|
C:GLU226
|
3.7
|
24.1
|
1.0
|
|
OE1
|
C:GLU226
|
3.8
|
25.9
|
1.0
|
|
N
|
C:GLY186
|
3.8
|
21.7
|
1.0
|
|
CA
|
C:GLY181
|
3.9
|
26.6
|
1.0
|
|
OG1
|
C:THR187
|
3.9
|
19.9
|
1.0
|
|
CA
|
C:ILE185
|
3.9
|
56.7
|
1.0
|
|
N
|
C:ILE185
|
4.0
|
25.4
|
1.0
|
|
N
|
C:GLN184
|
4.0
|
31.6
|
1.0
|
|
CA
|
C:GLY186
|
4.1
|
33.1
|
1.0
|
|
CA
|
C:GLN184
|
4.1
|
35.8
|
1.0
|
|
N
|
C:THR187
|
4.2
|
23.7
|
1.0
|
|
N
|
C:GLU182
|
4.4
|
24.0
|
1.0
|
|
CA
|
C:THR187
|
4.4
|
26.6
|
1.0
|
|
CB
|
C:GLN184
|
4.5
|
34.3
|
1.0
|
|
N
|
C:GLY181
|
4.7
|
14.5
|
1.0
|
|
CB
|
C:THR187
|
4.7
|
27.8
|
1.0
|
|
O
|
C:ALA180
|
4.7
|
19.1
|
1.0
|
|
CD
|
C:GLN184
|
4.8
|
33.3
|
1.0
|
|
C
|
C:GLU182
|
4.8
|
25.4
|
1.0
|
|
CA
|
C:GLU182
|
4.8
|
27.3
|
1.0
|
|
O
|
C:GLU182
|
4.9
|
37.7
|
1.0
|
|
Calcium binding site 7 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 7 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1124
b:49.4
occ:0.50
|
O
|
D:MET98
|
2.5
|
29.0
|
1.0
|
|
O
|
D:GLY100
|
2.6
|
31.8
|
1.0
|
|
O
|
D:GLY102
|
3.2
|
25.3
|
1.0
|
|
C
|
D:MET98
|
3.4
|
34.4
|
1.0
|
|
CA
|
D:LYS99
|
3.7
|
34.6
|
1.0
|
|
OE2
|
D:GLU142
|
3.8
|
29.0
|
1.0
|
|
C
|
D:LYS99
|
3.8
|
36.6
|
1.0
|
|
C
|
D:GLY100
|
3.8
|
40.5
|
1.0
|
|
N
|
D:GLY102
|
3.8
|
42.1
|
1.0
|
|
C
|
D:GLY102
|
3.8
|
37.0
|
1.0
|
|
N
|
D:LYS99
|
3.9
|
23.1
|
1.0
|
|
N
|
D:GLY100
|
4.0
|
35.9
|
1.0
|
|
CD
|
D:GLU142
|
4.0
|
28.6
|
1.0
|
|
CA
|
D:GLY102
|
4.2
|
36.8
|
1.0
|
|
O
|
D:LYS99
|
4.2
|
43.8
|
1.0
|
|
OE1
|
D:GLU142
|
4.4
|
32.4
|
1.0
|
|
C
|
D:LEU101
|
4.5
|
36.7
|
1.0
|
|
CG
|
D:GLU142
|
4.6
|
26.5
|
1.0
|
|
CA
|
D:GLY100
|
4.6
|
38.6
|
1.0
|
|
O
|
D:HOH1200
|
4.6
|
38.3
|
1.0
|
|
CA
|
D:MET98
|
4.7
|
30.8
|
1.0
|
|
N
|
D:LEU101
|
4.7
|
37.1
|
1.0
|
|
N
|
D:THR103
|
4.7
|
32.3
|
1.0
|
|
OE1
|
B:GLU92
|
4.7
|
46.0
|
1.0
|
|
OG1
|
D:THR103
|
4.8
|
38.8
|
1.0
|
|
CA
|
D:LEU101
|
4.8
|
37.5
|
1.0
|
|
CD
|
D:LYS99
|
4.9
|
39.4
|
1.0
|
|
CE
|
B:LYS68
|
5.0
|
26.3
|
1.0
|
|
NZ
|
B:LYS68
|
5.0
|
24.0
|
1.0
|
|
Calcium binding site 8 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 8 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1134
b:35.5
occ:1.00
|
O
|
D:GLY186
|
2.1
|
16.5
|
1.0
|
|
O
|
D:GLN184
|
2.2
|
22.4
|
1.0
|
|
O
|
D:GLY181
|
2.4
|
15.8
|
1.0
|
|
OE2
|
D:GLU226
|
2.5
|
18.4
|
1.0
|
|
O
|
D:HOH1258
|
2.7
|
21.6
|
1.0
|
|
C
|
D:GLN184
|
3.3
|
25.1
|
1.0
|
|
C
|
D:GLY181
|
3.3
|
21.0
|
1.0
|
|
C
|
D:GLY186
|
3.3
|
24.8
|
1.0
|
|
CD
|
D:GLU226
|
3.3
|
15.7
|
1.0
|
|
O
|
D:ILE185
|
3.3
|
25.4
|
1.0
|
|
OE1
|
D:GLU226
|
3.5
|
17.0
|
1.0
|
|
C
|
D:ILE185
|
3.5
|
46.5
|
1.0
|
|
CG
|
D:GLN184
|
3.8
|
26.6
|
1.0
|
|
OG1
|
D:THR187
|
3.9
|
19.5
|
1.0
|
|
CA
|
D:GLY181
|
3.9
|
20.8
|
1.0
|
|
N
|
D:GLY186
|
4.0
|
26.3
|
1.0
|
|
N
|
D:ILE185
|
4.1
|
24.4
|
1.0
|
|
N
|
D:GLN184
|
4.1
|
25.0
|
1.0
|
|
CA
|
D:ILE185
|
4.1
|
47.9
|
1.0
|
|
CA
|
D:GLN184
|
4.2
|
25.4
|
1.0
|
|
CA
|
D:GLY186
|
4.2
|
24.0
|
1.0
|
|
N
|
D:GLU182
|
4.2
|
21.8
|
1.0
|
|
N
|
D:THR187
|
4.3
|
20.6
|
1.0
|
|
O
|
D:HOH1152
|
4.4
|
21.7
|
1.0
|
|
CA
|
D:THR187
|
4.4
|
24.3
|
1.0
|
|
O
|
D:HOH1282
|
4.5
|
34.0
|
1.0
|
|
CB
|
D:GLN184
|
4.5
|
25.9
|
1.0
|
|
C
|
D:GLU182
|
4.6
|
29.6
|
1.0
|
|
CA
|
D:GLU182
|
4.6
|
28.6
|
1.0
|
|
CB
|
D:THR187
|
4.7
|
24.1
|
1.0
|
|
CG
|
D:GLU226
|
4.8
|
15.7
|
1.0
|
|
O
|
D:ALA180
|
4.8
|
25.3
|
1.0
|
|
O
|
D:GLU182
|
4.8
|
27.9
|
1.0
|
|
N
|
D:GLY181
|
4.8
|
13.5
|
1.0
|
|
CD
|
D:GLN184
|
4.9
|
30.3
|
1.0
|
|
Calcium binding site 9 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 9 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1125
b:89.3
occ:0.50
|
O
|
E:GLY100
|
2.2
|
37.1
|
1.0
|
|
O
|
E:HOH1213
|
2.9
|
27.9
|
1.0
|
|
O
|
E:MET98
|
3.0
|
44.3
|
1.0
|
|
C
|
E:LYS99
|
3.4
|
42.2
|
1.0
|
|
C
|
E:GLY100
|
3.4
|
51.6
|
1.0
|
|
CA
|
E:LYS99
|
3.6
|
41.1
|
1.0
|
|
O
|
A:HOH1237
|
3.7
|
35.0
|
1.0
|
|
N
|
E:GLY100
|
3.7
|
38.6
|
1.0
|
|
O
|
E:LYS99
|
3.7
|
39.9
|
1.0
|
|
OE1
|
A:GLU92
|
3.9
|
44.6
|
1.0
|
|
C
|
E:MET98
|
3.9
|
33.2
|
1.0
|
|
O
|
E:GLY102
|
4.0
|
33.9
|
1.0
|
|
CA
|
E:GLY100
|
4.1
|
51.4
|
1.0
|
|
N
|
E:GLY102
|
4.2
|
46.2
|
1.0
|
|
N
|
E:LYS99
|
4.2
|
34.1
|
1.0
|
|
OE1
|
E:GLU142
|
4.4
|
38.0
|
1.0
|
|
N
|
E:LEU101
|
4.4
|
45.2
|
1.0
|
|
CD
|
E:GLU142
|
4.5
|
30.1
|
1.0
|
|
OE2
|
E:GLU142
|
4.5
|
30.0
|
1.0
|
|
O
|
A:HOH1151
|
4.6
|
39.0
|
1.0
|
|
CA
|
E:LEU101
|
4.6
|
39.0
|
1.0
|
|
C
|
E:GLY102
|
4.7
|
32.5
|
1.0
|
|
C
|
E:LEU101
|
4.7
|
38.0
|
1.0
|
|
O
|
E:HOH1197
|
4.8
|
38.0
|
1.0
|
|
CA
|
E:GLY102
|
4.9
|
34.8
|
1.0
|
|
CB
|
E:LYS99
|
4.9
|
41.0
|
1.0
|
|
NH2
|
A:ARG84
|
5.0
|
41.9
|
1.0
|
|
CD
|
A:GLU92
|
5.0
|
32.9
|
1.0
|
|
Calcium binding site 10 out
of 11 in 1dm5
Go back to
Calcium Binding Sites List in 1dm5
Calcium binding site 10 out
of 11 in the Annexin XII E105K Homohexamer Crystal Structure
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Annexin XII E105K Homohexamer Crystal Structure within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca1135
b:54.5
occ:1.00
|
O
|
E:GLY181
|
2.2
|
43.4
|
1.0
|
|
OE2
|
E:GLU226
|
2.4
|
33.7
|
1.0
|
|
O
|
E:GLN184
|
2.4
|
39.1
|
1.0
|
|
O
|
E:GLY186
|
2.6
|
39.6
|
1.0
|
|
CD
|
E:GLU226
|
3.3
|
28.1
|
1.0
|
|
C
|
E:GLY181
|
3.4
|
36.3
|
1.0
|
|
C
|
E:GLN184
|
3.4
|
36.3
|
1.0
|
|
O
|
E:ILE185
|
3.5
|
58.0
|
1.0
|
|
OE1
|
E:GLU226
|
3.5
|
39.3
|
1.0
|
|
C
|
E:GLY186
|
3.5
|
40.6
|
1.0
|
|
C
|
E:ILE185
|
3.7
|
71.9
|
1.0
|
|
CA
|
E:GLY181
|
4.0
|
33.6
|
1.0
|
|
OG1
|
E:THR187
|
4.0
|
37.5
|
1.0
|
|
CG
|
E:GLN184
|
4.1
|
37.0
|
1.0
|
|
N
|
E:GLY186
|
4.1
|
29.1
|
1.0
|
|
N
|
E:GLN184
|
4.2
|
42.8
|
1.0
|
|
N
|
E:ILE185
|
4.2
|
60.2
|
1.0
|
|
CA
|
E:GLY186
|
4.2
|
38.6
|
1.0
|
|
CA
|
E:GLN184
|
4.3
|
37.7
|
1.0
|
|
CA
|
E:ILE185
|
4.3
|
71.5
|
1.0
|
|
N
|
E:THR187
|
4.4
|
26.6
|
1.0
|
|
N
|
E:GLU182
|
4.5
|
31.0
|
1.0
|
|
CA
|
E:THR187
|
4.5
|
33.1
|
1.0
|
|
O
|
E:GLU182
|
4.6
|
45.4
|
1.0
|
|
C
|
E:GLU182
|
4.7
|
46.6
|
1.0
|
|
CA
|
E:GLU182
|
4.7
|
46.6
|
1.0
|
|
CG
|
E:GLU226
|
4.7
|
29.0
|
1.0
|
|
CB
|
E:GLN184
|
4.7
|
38.1
|
1.0
|
|
O
|
E:ALA180
|
4.8
|
31.7
|
1.0
|
|
CB
|
E:THR187
|
4.9
|
33.0
|
1.0
|
|
N
|
E:GLY181
|
4.9
|
32.0
|
1.0
|
|
Reference:
J.P.Cartailler,
H.T.Haigler,
H.Luecke.
Annexin XII E105K Crystal Structure: Identification of A pH-Dependent Switch For Mutant Hexamerization. Biochemistry V. 39 2475 2000.
ISSN: ISSN 0006-2960
PubMed: 10704197
DOI: 10.1021/BI992278D
Page generated: Mon Jul 7 14:27:18 2025
|
