Atomistry » Calcium » PDB 1jf5-1jv2 » 1jrq
Atomistry »
  Calcium »
    PDB 1jf5-1jv2 »
      1jrq »

Calcium in PDB 1jrq: X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase

Enzymatic activity of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase

All present enzymatic activity of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase:
1.4.3.4;

Protein crystallography data

The structure of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase, PDB code: 1jrq was solved by J.M.Murray, C.R.Kurtis, W.Tambarajah, C.G.Saysell, C.M.Wilmot, M.R.Parsons, S.E.V.Phillips, P.F.Knowles, M.J.Mcpherson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 134.540, 166.450, 79.380, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.5

Other elements in 1jrq:

The structure of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase (pdb code 1jrq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase, PDB code: 1jrq:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 1jrq

Go back to Calcium Binding Sites List in 1jrq
Calcium binding site 1 out of 4 in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca802

b:26.4
occ:1.00
 O A:ALA679 2.4 18.1 1.0
OD1 A:ASP535 2.4 18.8 1.0
OD1 A:ASP533 2.4 26.7 1.0
OD1 A:ASP678 2.4 26.0 1.0
O A:LEU534 2.5 24.4 1.0
O A:HOH948 2.6 15.3 1.0
C A:LEU534 3.4 22.2 1.0
C A:ALA679 3.5 20.6 1.0
CG A:ASP535 3.6 21.1 1.0
NZ A:LYS133 3.6 22.6 1.0
CG A:ASP678 3.6 29.3 1.0
CG A:ASP533 3.6 26.0 1.0
N A:ALA679 3.6 22.8 1.0
C A:ASP533 4.0 22.1 1.0
CA A:ASP535 4.1 22.0 1.0
N A:LEU534 4.1 23.5 1.0
N A:ASP535 4.1 21.4 1.0
CA A:ALA679 4.1 21.2 1.0
C A:ASP678 4.1 23.6 1.0
O A:ASP533 4.2 20.1 1.0
OD2 A:ASP533 4.2 26.4 1.0
OD2 A:ASP678 4.3 29.8 1.0
CA A:ASP678 4.4 24.9 1.0
CB A:ASP535 4.4 21.1 1.0
CA A:LEU534 4.4 23.2 1.0
CA A:ASP533 4.4 22.0 1.0
OD2 A:ASP535 4.4 20.6 1.0
O A:GLU539 4.5 26.6 1.0
N A:VAL680 4.6 18.2 1.0
CB A:ASP678 4.6 27.3 1.0
CB A:ASP533 4.6 23.4 1.0
ND2 A:ASN541 4.7 19.6 1.0
O A:ASP678 4.8 23.9 1.0
CA A:VAL680 4.8 21.9 1.0
CG2 A:VAL680 4.9 22.1 1.0
CE A:LYS133 4.9 23.9 1.0
CB A:ALA679 4.9 19.8 1.0

Calcium binding site 2 out of 4 in 1jrq

Go back to Calcium Binding Sites List in 1jrq
Calcium binding site 2 out of 4 in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca803

b:54.8
occ:1.00
 O A:TYR667 2.5 28.2 1.0
OE2 A:GLU573 2.6 28.5 1.0
O A:HOH974 2.6 28.7 1.0
OE1 A:GLU672 2.7 39.8 1.0
O A:HOH979 2.8 30.7 1.0
O A:HOH1523 2.8 35.2 1.0
OE1 A:GLU573 3.1 25.9 1.0
CD A:GLU573 3.2 30.4 1.0
CD A:GLU672 3.7 41.1 1.0
C A:TYR667 3.7 27.3 1.0
CE1 A:HIS644 3.8 49.6 1.0
CG A:GLU672 4.0 40.2 1.0
O A:HOH1033 4.0 47.4 1.0
ND1 A:HIS644 4.0 48.8 1.0
OE1 A:GLU647 4.3 26.1 1.0
N A:ARG642 4.3 25.5 1.0
CB A:ARG642 4.4 31.8 1.0
CA A:TYR667 4.6 27.6 1.0
CB A:GLU672 4.6 35.8 1.0
OE2 A:GLU647 4.6 28.6 1.0
CB A:THR641 4.6 24.6 1.0
N A:SER668 4.6 29.2 1.0
CG A:ARG642 4.7 33.5 1.0
CG A:GLU573 4.7 28.8 1.0
CA A:SER668 4.7 30.4 1.0
O A:ARG642 4.8 25.7 1.0
OE2 A:GLU672 4.8 42.2 1.0
CD A:GLU647 4.9 28.0 1.0
CA A:ARG642 5.0 27.8 1.0

Calcium binding site 3 out of 4 in 1jrq

Go back to Calcium Binding Sites List in 1jrq
Calcium binding site 3 out of 4 in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca802

b:29.6
occ:1.00
 OD1 B:ASP535 2.4 28.6 1.0
OD1 B:ASP533 2.4 20.6 1.0
O B:ALA679 2.4 28.7 1.0
OD1 B:ASP678 2.5 27.2 1.0
O B:LEU534 2.5 26.1 1.0
O B:HOH981 2.7 25.3 1.0
C B:ALA679 3.4 28.2 1.0
C B:LEU534 3.5 28.0 1.0
N B:ALA679 3.5 27.9 1.0
CG B:ASP533 3.6 23.2 1.0
CG B:ASP535 3.6 27.6 1.0
CG B:ASP678 3.7 30.5 1.0
NZ B:LYS133 3.7 23.1 1.0
CA B:ALA679 4.0 26.9 1.0
C B:ASP678 4.0 28.2 1.0
C B:ASP533 4.1 24.7 1.0
CA B:ASP535 4.1 27.3 1.0
N B:ASP535 4.1 27.3 1.0
N B:LEU534 4.2 26.4 1.0
OD2 B:ASP533 4.2 22.2 1.0
O B:ASP533 4.3 24.5 1.0
CA B:ASP678 4.3 28.6 1.0
OD2 B:ASP678 4.4 30.4 1.0
OD2 B:ASP535 4.4 28.4 1.0
O B:GLU539 4.4 31.8 1.0
CB B:ASP535 4.4 27.4 1.0
CA B:LEU534 4.5 25.6 1.0
CA B:ASP533 4.5 23.9 1.0
N B:VAL680 4.6 28.7 1.0
CB B:ASP678 4.6 29.1 1.0
ND2 B:ASN541 4.7 28.1 1.0
CB B:ASP533 4.7 23.0 1.0
CG2 B:VAL680 4.8 24.3 1.0
O B:ASP678 4.8 28.3 1.0
CB B:ALA679 4.8 27.2 1.0
CA B:VAL680 4.9 24.8 1.0
CE B:LYS133 5.0 27.0 1.0

Calcium binding site 4 out of 4 in 1jrq

Go back to Calcium Binding Sites List in 1jrq
Calcium binding site 4 out of 4 in the X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of X-Ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. Coli Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca803

b:54.5
occ:1.00
 O B:TYR667 2.5 28.8 1.0
O B:HOH1007 2.7 35.7 1.0
OE2 B:GLU573 2.7 29.1 1.0
OE2 B:GLU672 2.7 48.8 1.0
O B:HOH1012 2.9 35.5 1.0
OE1 B:GLU573 3.0 32.0 1.0
CD B:GLU573 3.2 33.8 1.0
CD B:GLU672 3.5 48.8 1.0
CG B:GLU672 3.6 45.6 1.0
O B:HOH1064 3.7 44.1 1.0
C B:TYR667 3.8 29.7 1.0
NE2 B:HIS644 4.2 53.6 1.0
CD2 B:HIS644 4.3 52.6 1.0
CB B:GLU672 4.4 40.6 1.0
OE1 B:GLU647 4.5 35.5 1.0
N B:ARG642 4.5 29.7 1.0
CB B:ARG642 4.6 32.1 1.0
CA B:TYR667 4.6 30.6 1.0
CA B:SER668 4.6 32.4 1.0
N B:SER668 4.7 31.2 1.0
OE1 B:GLU672 4.7 50.3 1.0
CG B:GLU573 4.7 31.6 1.0
OE2 B:GLU647 4.8 37.1 1.0
CB B:THR641 4.9 28.9 1.0
O B:ARG642 5.0 28.8 1.0

Reference:

J.M.Murray, C.R.Kurtis, W.Tambyrajah, C.G.Saysell, C.M.Wilmot, M.R.Parsons, S.E.Phillips, P.F.Knowles, M.J.Mcpherson. Conserved Tyrosine-369 in the Active Site of Escherichia Coli Copper Amine Oxidase Is Not Essential. Biochemistry V. 40 12808 2001.
ISSN: ISSN 0006-2960
PubMed: 11669617
DOI: 10.1021/BI011187P
Page generated: Mon Jul 7 16:13:24 2025

Last articles

Mg in 6T5B
Mg in 6T3K
Mg in 6T26
Mg in 6T25
Mg in 6T24
Mg in 6T2C
Mg in 6T1Y
Mg in 6T23
Mg in 6T20
Mg in 6T0V
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy