Calcium in PDB 1kmb: Selectin-Like Mutant of Mannose-Binding Protein A
Protein crystallography data
The structure of Selectin-Like Mutant of Mannose-Binding Protein A, PDB code: 1kmb
was solved by
K.K.-S.Ng,
W.I.Weis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
10.00 /
2.10
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.700,
84.900,
98.700,
90.00,
105.30,
90.00
|
|
R / Rfree (%)
|
20.2 /
26.5
|
Other elements in 1kmb:
The structure of Selectin-Like Mutant of Mannose-Binding Protein A also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Selectin-Like Mutant of Mannose-Binding Protein A
(pdb code 1kmb). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Selectin-Like Mutant of Mannose-Binding Protein A, PDB code: 1kmb:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 1 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca1
b:13.4
occ:1.00
|
O
|
1:HOH365
|
2.3
|
14.2
|
1.0
|
|
OD1
|
1:ASP194
|
2.3
|
16.7
|
1.0
|
|
OD2
|
1:ASP161
|
2.4
|
14.1
|
1.0
|
|
OD1
|
1:ASP188
|
2.4
|
18.4
|
1.0
|
|
O
|
1:GLU193
|
2.4
|
13.2
|
1.0
|
|
OE2
|
1:GLU165
|
2.5
|
15.3
|
1.0
|
|
OD1
|
1:ASP161
|
2.6
|
9.7
|
1.0
|
|
OE1
|
1:GLU165
|
2.6
|
19.2
|
1.0
|
|
CG
|
1:ASP161
|
2.8
|
9.2
|
1.0
|
|
CD
|
1:GLU165
|
2.9
|
16.8
|
1.0
|
|
CG
|
1:ASP188
|
3.3
|
16.5
|
1.0
|
|
C
|
1:GLU193
|
3.4
|
11.5
|
1.0
|
|
CG
|
1:ASP194
|
3.5
|
12.7
|
1.0
|
|
CB
|
1:ASP188
|
3.8
|
14.7
|
1.0
|
|
CA
|
1:ASP194
|
3.8
|
13.4
|
1.0
|
|
N
|
1:ASP194
|
4.0
|
10.5
|
1.0
|
|
O
|
1:HOH366
|
4.0
|
13.4
|
1.0
|
|
CA
|
1:CA3
|
4.1
|
13.2
|
1.0
|
|
CB
|
1:ASP194
|
4.2
|
12.4
|
1.0
|
|
OD2
|
1:ASP188
|
4.3
|
14.3
|
1.0
|
|
CB
|
1:ASP161
|
4.3
|
9.7
|
1.0
|
|
N
|
1:GLU193
|
4.3
|
16.0
|
1.0
|
|
CA
|
1:ASP188
|
4.4
|
14.5
|
1.0
|
|
CG
|
1:GLU165
|
4.4
|
18.7
|
1.0
|
|
OD2
|
1:ASP194
|
4.4
|
11.8
|
1.0
|
|
CA
|
1:GLU193
|
4.5
|
15.5
|
1.0
|
|
OD2
|
1:ASP206
|
4.6
|
13.7
|
1.0
|
|
CZ
|
1:PHE168
|
4.6
|
12.8
|
1.0
|
|
O
|
1:ASP161
|
4.7
|
12.9
|
1.0
|
|
O
|
1:HOH362
|
4.7
|
18.4
|
1.0
|
|
O
|
1:HOH363
|
4.8
|
16.3
|
1.0
|
|
N
|
1:GLY166
|
4.8
|
12.6
|
1.0
|
|
O
|
1:HOH373
|
4.9
|
7.3
|
1.0
|
|
C
|
1:ASP194
|
4.9
|
12.5
|
1.0
|
|
Calcium binding site 2 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 2 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca2
b:20.7
occ:1.00
|
OE1
|
1:GLU185
|
2.2
|
28.2
|
1.0
|
|
OD1
|
1:ASP206
|
2.2
|
17.6
|
1.0
|
|
OD1
|
1:ASN187
|
2.4
|
23.3
|
1.0
|
|
OE1
|
1:GLU193
|
2.6
|
13.6
|
1.0
|
|
OD1
|
1:ASN205
|
2.6
|
10.3
|
0.5
|
|
O
|
1:ASP206
|
2.6
|
20.1
|
1.0
|
|
O
|
1:HOH356
|
2.9
|
33.2
|
1.0
|
|
CD
|
1:GLU185
|
3.3
|
24.7
|
1.0
|
|
CG
|
1:ASP206
|
3.3
|
15.1
|
1.0
|
|
CG
|
1:ASN187
|
3.4
|
20.2
|
1.0
|
|
O
|
1:HOH355
|
3.5
|
45.6
|
1.0
|
|
CD
|
1:GLU193
|
3.5
|
12.9
|
1.0
|
|
C
|
1:ASP206
|
3.7
|
16.2
|
1.0
|
|
OE2
|
1:GLU185
|
3.7
|
26.6
|
1.0
|
|
CG
|
1:ASN205
|
3.7
|
9.9
|
0.5
|
|
N
|
1:ASP206
|
3.8
|
12.8
|
1.0
|
|
OE2
|
1:GLU193
|
3.9
|
12.2
|
1.0
|
|
ND2
|
1:ASN187
|
3.9
|
20.6
|
1.0
|
|
OD2
|
1:ASP206
|
4.0
|
13.7
|
1.0
|
|
CA
|
1:ASP206
|
4.1
|
13.0
|
1.0
|
|
N
|
1:ASN187
|
4.2
|
18.5
|
1.0
|
|
ND2
|
1:ASN205
|
4.3
|
13.6
|
0.5
|
|
CB
|
1:ASP206
|
4.3
|
11.9
|
1.0
|
|
CG
|
1:GLU185
|
4.5
|
22.1
|
1.0
|
|
C
|
1:ASN205
|
4.6
|
12.1
|
1.0
|
|
CB
|
1:HIS189
|
4.6
|
20.0
|
1.0
|
|
CB
|
1:ASN187
|
4.7
|
18.9
|
1.0
|
|
CG
|
1:GLU193
|
4.7
|
12.8
|
1.0
|
|
N
|
1:ASP188
|
4.8
|
18.0
|
1.0
|
|
N
|
1:HIS189
|
4.8
|
16.6
|
1.0
|
|
CB
|
1:GLU193
|
4.8
|
14.9
|
1.0
|
|
N
|
1:ILE207
|
4.8
|
15.7
|
1.0
|
|
CA
|
1:ASN187
|
4.9
|
20.0
|
1.0
|
|
CB
|
1:GLU185
|
4.9
|
20.2
|
1.0
|
|
CB
|
1:ASN205
|
4.9
|
16.8
|
1.0
|
|
CA
|
1:ASN205
|
5.0
|
15.4
|
1.0
|
|
Calcium binding site 3 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 3 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
1:Ca3
b:13.2
occ:1.00
|
O
|
1:HOH372
|
2.2
|
20.0
|
1.0
|
|
O
|
1:HOH373
|
2.3
|
7.3
|
1.0
|
|
OE1
|
1:GLU165
|
2.4
|
19.2
|
1.0
|
|
OD2
|
1:ASP194
|
2.4
|
11.8
|
1.0
|
|
O
|
1:HOH366
|
2.4
|
13.4
|
1.0
|
|
OD1
|
1:ASP194
|
2.7
|
16.7
|
1.0
|
|
CG
|
1:ASP194
|
2.9
|
12.7
|
1.0
|
|
CD
|
1:GLU165
|
3.6
|
16.8
|
1.0
|
|
CA
|
1:CA1
|
4.1
|
13.4
|
1.0
|
|
OD1
|
1:ASP188
|
4.1
|
18.4
|
1.0
|
|
CB
|
1:GLU165
|
4.2
|
15.8
|
1.0
|
|
CG
|
1:GLU165
|
4.3
|
18.7
|
1.0
|
|
O
|
1:HOH367
|
4.3
|
9.8
|
1.0
|
|
O
|
1:ASP161
|
4.4
|
12.9
|
1.0
|
|
CB
|
1:ASP194
|
4.4
|
12.4
|
1.0
|
|
O
|
1:HOH371
|
4.5
|
20.0
|
1.0
|
|
OE2
|
1:GLU165
|
4.5
|
15.3
|
1.0
|
|
CA
|
1:GLU165
|
4.7
|
16.4
|
1.0
|
|
OD2
|
1:ASP188
|
4.9
|
14.3
|
1.0
|
|
CG
|
1:ASP188
|
4.9
|
16.5
|
1.0
|
|
O
|
1:HOH369
|
5.0
|
26.8
|
1.0
|
|
OD2
|
1:ASP161
|
5.0
|
14.1
|
1.0
|
|
OD1
|
1:ASP161
|
5.0
|
9.7
|
1.0
|
|
Calcium binding site 4 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 4 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca1
b:34.8
occ:1.00
|
OD2
|
2:ASP161
|
2.3
|
32.3
|
1.0
|
|
OD1
|
2:ASP188
|
2.5
|
35.6
|
1.0
|
|
O
|
2:HOH258
|
2.5
|
26.0
|
1.0
|
|
OD1
|
2:ASP161
|
2.6
|
27.9
|
1.0
|
|
OE1
|
2:GLU165
|
2.7
|
39.9
|
1.0
|
|
O
|
2:GLU193
|
2.7
|
28.6
|
1.0
|
|
OD1
|
2:ASP194
|
2.7
|
34.5
|
1.0
|
|
CG
|
2:ASP161
|
2.8
|
34.0
|
1.0
|
|
OE2
|
2:GLU165
|
2.9
|
45.2
|
1.0
|
|
CD
|
2:GLU165
|
3.1
|
43.8
|
1.0
|
|
CG
|
2:ASP188
|
3.4
|
36.1
|
1.0
|
|
C
|
2:GLU193
|
3.5
|
29.9
|
1.0
|
|
CA
|
2:CA3
|
3.8
|
48.1
|
1.0
|
|
CA
|
2:ASP194
|
3.9
|
27.5
|
1.0
|
|
CG
|
2:ASP194
|
3.9
|
34.7
|
1.0
|
|
CB
|
2:ASP188
|
3.9
|
36.0
|
1.0
|
|
N
|
2:ASP194
|
4.0
|
28.3
|
1.0
|
|
O
|
2:HOH259
|
4.1
|
43.1
|
1.0
|
|
O
|
2:HOH255
|
4.2
|
20.3
|
1.0
|
|
OD2
|
2:ASP188
|
4.3
|
37.2
|
1.0
|
|
CZ
|
2:PHE168
|
4.3
|
30.1
|
1.0
|
|
CB
|
2:ASP161
|
4.3
|
33.4
|
1.0
|
|
N
|
2:GLU193
|
4.4
|
35.7
|
1.0
|
|
CB
|
2:ASP194
|
4.4
|
29.1
|
1.0
|
|
OD2
|
2:ASP206
|
4.5
|
18.9
|
1.0
|
|
CA
|
2:GLU193
|
4.6
|
31.4
|
1.0
|
|
CA
|
2:ASP188
|
4.6
|
37.1
|
1.0
|
|
CG
|
2:GLU165
|
4.6
|
45.1
|
1.0
|
|
O
|
2:ASP161
|
4.8
|
38.9
|
1.0
|
|
OD2
|
2:ASP194
|
4.9
|
37.7
|
1.0
|
|
N
|
2:GLY166
|
4.9
|
42.4
|
1.0
|
|
CE2
|
2:PHE168
|
4.9
|
30.0
|
1.0
|
|
CE1
|
2:PHE168
|
4.9
|
31.4
|
1.0
|
|
C
|
2:ASP194
|
5.0
|
26.0
|
1.0
|
|
CA
|
2:GLU165
|
5.0
|
46.0
|
1.0
|
|
Calcium binding site 5 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 5 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca2
b:40.1
occ:1.00
|
OE1
|
2:GLU193
|
2.2
|
32.0
|
1.0
|
|
OD1
|
2:ASN187
|
2.4
|
35.9
|
1.0
|
|
OD1
|
2:ASP206
|
2.5
|
26.1
|
1.0
|
|
OE1
|
2:GLU185
|
2.6
|
35.5
|
1.0
|
|
O
|
2:ASP206
|
2.7
|
26.2
|
1.0
|
|
OD1
|
2:ASN205
|
2.9
|
40.7
|
1.0
|
|
O
|
2:HOH265
|
3.0
|
31.4
|
1.0
|
|
CD
|
2:GLU193
|
3.2
|
31.1
|
1.0
|
|
CG
|
2:ASN187
|
3.3
|
35.0
|
1.0
|
|
CG
|
2:ASP206
|
3.5
|
29.1
|
1.0
|
|
CD
|
2:GLU185
|
3.5
|
33.9
|
1.0
|
|
OE2
|
2:GLU193
|
3.6
|
32.4
|
1.0
|
|
C
|
2:ASP206
|
3.7
|
28.6
|
1.0
|
|
ND2
|
2:ASN187
|
3.8
|
37.2
|
1.0
|
|
OE2
|
2:GLU185
|
3.8
|
36.9
|
1.0
|
|
CG
|
2:ASN205
|
3.8
|
34.7
|
1.0
|
|
N
|
2:ASP206
|
3.9
|
30.5
|
1.0
|
|
OD2
|
2:ASP206
|
4.1
|
18.9
|
1.0
|
|
ND2
|
2:ASN205
|
4.2
|
38.3
|
1.0
|
|
CA
|
2:ASP206
|
4.2
|
28.4
|
1.0
|
|
N
|
2:ASN187
|
4.3
|
30.7
|
1.0
|
|
CB
|
2:ASP206
|
4.5
|
28.6
|
1.0
|
|
CG
|
2:GLU193
|
4.5
|
30.1
|
1.0
|
|
CB
|
2:ASN187
|
4.5
|
32.3
|
1.0
|
|
CB
|
2:HIS189
|
4.5
|
45.5
|
1.0
|
|
N
|
2:ASP188
|
4.6
|
36.4
|
1.0
|
|
N
|
2:HIS189
|
4.6
|
39.5
|
1.0
|
|
CB
|
2:GLU193
|
4.7
|
28.4
|
1.0
|
|
C
|
2:ASN205
|
4.7
|
31.7
|
1.0
|
|
CA
|
2:ASN187
|
4.8
|
33.4
|
1.0
|
|
N
|
2:ILE207
|
4.9
|
29.2
|
1.0
|
|
CG
|
2:GLU185
|
4.9
|
30.9
|
1.0
|
|
C
|
2:ASN187
|
5.0
|
35.1
|
1.0
|
|
Calcium binding site 6 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 6 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
2:Ca3
b:48.1
occ:1.00
|
OE1
|
2:GLU165
|
2.4
|
39.9
|
1.0
|
|
OD1
|
2:ASP194
|
2.5
|
34.5
|
1.0
|
|
O
|
2:HOH259
|
2.9
|
43.1
|
1.0
|
|
CG
|
2:ASP194
|
3.3
|
34.7
|
1.0
|
|
OD2
|
2:ASP194
|
3.3
|
37.7
|
1.0
|
|
CD
|
2:GLU165
|
3.6
|
43.8
|
1.0
|
|
CA
|
2:CA1
|
3.8
|
34.8
|
1.0
|
|
O
|
2:ASP161
|
3.8
|
38.9
|
1.0
|
|
CB
|
2:GLU165
|
4.0
|
45.9
|
1.0
|
|
OD2
|
2:ASP161
|
4.2
|
32.3
|
1.0
|
|
CA
|
2:GLU165
|
4.2
|
46.0
|
1.0
|
|
CG
|
2:GLU165
|
4.3
|
45.1
|
1.0
|
|
OD1
|
2:ASP188
|
4.3
|
35.6
|
1.0
|
|
OD1
|
2:ASP161
|
4.4
|
27.9
|
1.0
|
|
CG
|
2:ASP161
|
4.5
|
34.0
|
1.0
|
|
OE2
|
2:GLU165
|
4.5
|
45.2
|
1.0
|
|
C
|
2:ASP161
|
4.7
|
39.6
|
1.0
|
|
N
|
2:GLU165
|
4.7
|
47.9
|
1.0
|
|
CB
|
2:ASP194
|
4.7
|
29.1
|
1.0
|
|
CA
|
2:GLU162
|
4.8
|
50.4
|
1.0
|
|
O
|
2:GLU162
|
4.8
|
56.8
|
1.0
|
|
O
|
2:HOH261
|
4.9
|
42.8
|
1.0
|
|
OD2
|
2:ASP188
|
4.9
|
37.2
|
1.0
|
|
CG
|
2:ASP188
|
5.0
|
36.1
|
1.0
|
|
Calcium binding site 7 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 7 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca1
b:18.5
occ:1.00
|
O
|
3:GLU193
|
2.4
|
12.9
|
1.0
|
|
OD1
|
3:ASP188
|
2.4
|
11.9
|
1.0
|
|
OD1
|
3:ASP194
|
2.5
|
15.1
|
1.0
|
|
O
|
3:HOH294
|
2.5
|
21.5
|
1.0
|
|
OD2
|
3:ASP161
|
2.6
|
20.8
|
1.0
|
|
OE1
|
3:GLU165
|
2.6
|
16.9
|
1.0
|
|
OE2
|
3:GLU165
|
2.7
|
13.6
|
1.0
|
|
OD1
|
3:ASP161
|
2.7
|
21.0
|
1.0
|
|
CD
|
3:GLU165
|
3.0
|
12.3
|
1.0
|
|
CG
|
3:ASP161
|
3.0
|
17.0
|
1.0
|
|
CG
|
3:ASP188
|
3.3
|
13.5
|
1.0
|
|
C
|
3:GLU193
|
3.3
|
11.5
|
1.0
|
|
CG
|
3:ASP194
|
3.6
|
11.6
|
1.0
|
|
CB
|
3:ASP188
|
3.7
|
13.0
|
1.0
|
|
CA
|
3:ASP194
|
3.8
|
13.6
|
1.0
|
|
N
|
3:ASP194
|
3.9
|
12.2
|
1.0
|
|
CA
|
3:CA3
|
4.0
|
17.6
|
1.0
|
|
OD2
|
3:ASP188
|
4.3
|
13.6
|
1.0
|
|
CB
|
3:ASP194
|
4.3
|
10.9
|
1.0
|
|
CA
|
3:ASP188
|
4.3
|
14.7
|
1.0
|
|
N
|
3:GLU193
|
4.3
|
14.9
|
1.0
|
|
CA
|
3:GLU193
|
4.4
|
13.8
|
1.0
|
|
OD2
|
3:ASP206
|
4.4
|
17.3
|
1.0
|
|
CZ
|
3:PHE168
|
4.5
|
10.1
|
1.0
|
|
CB
|
3:ASP161
|
4.5
|
18.8
|
1.0
|
|
OD2
|
3:ASP194
|
4.5
|
12.8
|
1.0
|
|
CG
|
3:GLU165
|
4.5
|
10.5
|
1.0
|
|
O
|
3:HOH293
|
4.6
|
21.7
|
1.0
|
|
N
|
3:GLY166
|
4.8
|
22.5
|
1.0
|
|
O
|
3:HOH292
|
4.8
|
22.0
|
1.0
|
|
O
|
3:ASP161
|
4.8
|
18.4
|
1.0
|
|
N
|
3:ASP188
|
4.9
|
12.3
|
1.0
|
|
C
|
3:ASP194
|
5.0
|
13.7
|
1.0
|
|
Calcium binding site 8 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 8 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca2
b:24.1
occ:1.00
|
OD1
|
3:ASP206
|
2.3
|
15.3
|
1.0
|
|
OE1
|
3:GLU185
|
2.4
|
30.2
|
1.0
|
|
OE1
|
3:GLU193
|
2.4
|
18.4
|
1.0
|
|
OD1
|
3:ASN187
|
2.5
|
17.2
|
1.0
|
|
O
|
3:ASP206
|
2.6
|
15.5
|
1.0
|
|
OD1
|
3:ASN205
|
2.7
|
36.2
|
1.0
|
|
O
|
3:HOH287
|
2.9
|
27.1
|
1.0
|
|
O
|
3:HOH286
|
3.0
|
23.1
|
1.0
|
|
CG
|
3:ASP206
|
3.4
|
14.2
|
1.0
|
|
CG
|
3:ASN187
|
3.4
|
14.4
|
1.0
|
|
CD
|
3:GLU193
|
3.4
|
11.1
|
1.0
|
|
CD
|
3:GLU185
|
3.5
|
33.1
|
1.0
|
|
C
|
3:ASP206
|
3.7
|
16.3
|
1.0
|
|
CG
|
3:ASN205
|
3.7
|
35.1
|
1.0
|
|
ND2
|
3:ASN187
|
3.8
|
16.4
|
1.0
|
|
OE2
|
3:GLU193
|
3.8
|
17.5
|
1.0
|
|
N
|
3:ASP206
|
3.8
|
19.8
|
1.0
|
|
OE2
|
3:GLU185
|
3.9
|
35.1
|
1.0
|
|
OD2
|
3:ASP206
|
4.1
|
17.3
|
1.0
|
|
CA
|
3:ASP206
|
4.2
|
16.4
|
1.0
|
|
ND2
|
3:ASN205
|
4.2
|
36.8
|
1.0
|
|
N
|
3:ASN187
|
4.2
|
14.8
|
1.0
|
|
CB
|
3:ASP206
|
4.4
|
15.9
|
1.0
|
|
CB
|
3:HIS189
|
4.5
|
11.7
|
1.0
|
|
C
|
3:ASN205
|
4.7
|
23.2
|
1.0
|
|
CG
|
3:GLU193
|
4.7
|
9.7
|
1.0
|
|
CG
|
3:GLU185
|
4.7
|
29.5
|
1.0
|
|
CB
|
3:ASN187
|
4.7
|
14.6
|
1.0
|
|
N
|
3:HIS189
|
4.7
|
15.3
|
1.0
|
|
N
|
3:ASP188
|
4.8
|
12.3
|
1.0
|
|
CB
|
3:GLU193
|
4.8
|
10.5
|
1.0
|
|
CA
|
3:ASN187
|
4.9
|
12.1
|
1.0
|
|
N
|
3:ILE207
|
4.9
|
16.3
|
1.0
|
|
CB
|
3:ASN205
|
5.0
|
31.1
|
1.0
|
|
CA
|
3:ASN205
|
5.0
|
28.0
|
1.0
|
|
Calcium binding site 9 out
of 9 in 1kmb
Go back to
Calcium Binding Sites List in 1kmb
Calcium binding site 9 out
of 9 in the Selectin-Like Mutant of Mannose-Binding Protein A
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Selectin-Like Mutant of Mannose-Binding Protein A within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
3:Ca3
b:17.6
occ:1.00
|
OE1
|
3:GLU165
|
2.4
|
16.9
|
1.0
|
|
OD1
|
3:ASP194
|
2.6
|
15.1
|
1.0
|
|
OD2
|
3:ASP194
|
2.6
|
12.8
|
1.0
|
|
O
|
3:HOH350
|
2.7
|
37.5
|
1.0
|
|
CG
|
3:ASP194
|
3.0
|
11.6
|
1.0
|
|
CD
|
3:GLU165
|
3.6
|
12.3
|
1.0
|
|
CA
|
3:CA1
|
4.0
|
18.5
|
1.0
|
|
OD1
|
3:ASP188
|
4.1
|
11.9
|
1.0
|
|
CB
|
3:GLU165
|
4.2
|
16.8
|
1.0
|
|
O
|
3:ASP161
|
4.3
|
18.4
|
1.0
|
|
CG
|
3:GLU165
|
4.3
|
10.5
|
1.0
|
|
O
|
3:HOH349
|
4.3
|
21.9
|
1.0
|
|
O
|
3:HOH352
|
4.5
|
16.5
|
1.0
|
|
CB
|
3:ASP194
|
4.5
|
10.9
|
1.0
|
|
CA
|
3:GLU165
|
4.5
|
19.6
|
1.0
|
|
OE2
|
3:GLU165
|
4.5
|
13.6
|
1.0
|
|
CG
|
3:ASP188
|
4.9
|
13.5
|
1.0
|
|
OD1
|
3:ASP161
|
4.9
|
21.0
|
1.0
|
|
O
|
3:HOH353
|
4.9
|
20.0
|
1.0
|
|
OD2
|
3:ASP188
|
4.9
|
13.6
|
1.0
|
|
N
|
3:GLU165
|
5.0
|
19.3
|
1.0
|
|
OD2
|
3:ASP161
|
5.0
|
20.8
|
1.0
|
|
Reference:
K.K.Ng,
W.I.Weis.
Structure of A Selectin-Like Mutant of Mannose-Binding Protein Complexed with Sialylated and Sulfated Lewis(X) Oligosaccharides. Biochemistry V. 36 979 1997.
ISSN: ISSN 0006-2960
PubMed: 9033386
DOI: 10.1021/BI962564E
Page generated: Mon Jul 7 16:31:30 2025
|
