Calcium in PDB 1kx0: Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
Protein crystallography data
The structure of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man, PDB code: 1kx0
was solved by
K.K.Ng,
A.R.Kolatkar,
S.Park-Snyder,
H.Feinberg,
D.A.Clark,
K.Drickamer,
W.I.Weis,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
2.00
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.080,
85.110,
97.660,
90.00,
97.66,
90.00
|
|
R / Rfree (%)
|
20.1 /
23.2
|
Other elements in 1kx0:
The structure of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
(pdb code 1kx0). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the
Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man, PDB code: 1kx0:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Calcium binding site 1 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 1 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca503
b:22.3
occ:1.00
|
OD2
|
A:ASP194
|
2.3
|
20.0
|
1.0
|
|
O
|
A:GLU193
|
2.4
|
17.7
|
1.0
|
|
OD2
|
A:ASP161
|
2.4
|
21.7
|
1.0
|
|
O
|
A:HOH594
|
2.4
|
20.1
|
1.0
|
|
OD2
|
A:ASP188
|
2.6
|
24.9
|
1.0
|
|
OE1
|
A:GLU165
|
2.6
|
21.6
|
1.0
|
|
OD1
|
A:ASP161
|
2.7
|
20.3
|
1.0
|
|
OE2
|
A:GLU165
|
2.7
|
18.5
|
1.0
|
|
CG
|
A:ASP161
|
2.9
|
24.7
|
1.0
|
|
CD
|
A:GLU165
|
3.0
|
19.8
|
1.0
|
|
C
|
A:GLU193
|
3.3
|
20.4
|
1.0
|
|
CG
|
A:ASP188
|
3.4
|
26.8
|
1.0
|
|
CG
|
A:ASP194
|
3.5
|
20.3
|
1.0
|
|
CA
|
A:ASP194
|
3.7
|
20.1
|
1.0
|
|
N
|
A:ASP194
|
3.9
|
19.6
|
1.0
|
|
CB
|
A:ASP188
|
4.0
|
25.7
|
1.0
|
|
CA
|
A:CA505
|
4.0
|
23.6
|
1.0
|
|
N
|
A:GLU193
|
4.1
|
20.8
|
1.0
|
|
CB
|
A:ASP194
|
4.2
|
19.1
|
1.0
|
|
OD1
|
A:ASP188
|
4.2
|
25.4
|
1.0
|
|
O
|
A:HOH643
|
4.3
|
30.5
|
1.0
|
|
CA
|
A:GLU193
|
4.4
|
20.8
|
1.0
|
|
CB
|
A:ASP161
|
4.4
|
22.1
|
1.0
|
|
OD1
|
A:ASP194
|
4.5
|
19.3
|
1.0
|
|
CA
|
A:ASP188
|
4.5
|
24.4
|
1.0
|
|
CG
|
A:GLU165
|
4.5
|
20.5
|
1.0
|
|
CZ
|
A:PHE168
|
4.6
|
20.8
|
1.0
|
|
N
|
A:GLY166
|
4.6
|
22.8
|
1.0
|
|
O
|
A:HOH563
|
4.7
|
22.6
|
1.0
|
|
OD1
|
A:ASP206
|
4.7
|
17.0
|
1.0
|
|
O
|
A:ASP161
|
4.7
|
21.1
|
1.0
|
|
O
|
A:HOH519
|
4.9
|
19.7
|
1.0
|
|
C
|
A:ASP194
|
4.9
|
20.7
|
1.0
|
|
Calcium binding site 2 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 2 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca504
b:24.2
occ:1.00
|
OD2
|
A:ASP206
|
2.3
|
18.5
|
1.0
|
|
OD1
|
A:ASN205
|
2.4
|
19.1
|
1.0
|
|
OE2
|
A:GLU193
|
2.5
|
24.3
|
1.0
|
|
O3
|
A:MAN502
|
2.5
|
23.3
|
0.5
|
|
OD1
|
A:ASN187
|
2.5
|
20.4
|
1.0
|
|
O
|
A:ASP206
|
2.5
|
19.1
|
1.0
|
|
O4
|
A:MAN502
|
2.6
|
23.4
|
0.5
|
|
O3
|
A:MAN502
|
2.6
|
26.9
|
0.5
|
|
OE2
|
A:GLU185
|
2.7
|
20.2
|
1.0
|
|
O4
|
A:MAN502
|
2.7
|
26.2
|
0.5
|
|
C3
|
A:MAN502
|
3.3
|
24.2
|
0.5
|
|
CD
|
A:GLU193
|
3.3
|
22.2
|
1.0
|
|
CG
|
A:ASP206
|
3.4
|
20.8
|
1.0
|
|
C4
|
A:MAN502
|
3.4
|
24.4
|
0.5
|
|
C3
|
A:MAN502
|
3.4
|
26.8
|
0.5
|
|
CD
|
A:GLU185
|
3.4
|
23.4
|
1.0
|
|
CG
|
A:ASN205
|
3.4
|
21.9
|
1.0
|
|
CG
|
A:ASN187
|
3.5
|
22.8
|
1.0
|
|
C4
|
A:MAN502
|
3.5
|
28.0
|
0.5
|
|
C
|
A:ASP206
|
3.5
|
21.0
|
1.0
|
|
OE1
|
A:GLU193
|
3.6
|
23.6
|
1.0
|
|
OE1
|
A:GLU185
|
3.6
|
20.9
|
1.0
|
|
N
|
A:ASP206
|
3.7
|
21.1
|
1.0
|
|
ND2
|
A:ASN205
|
3.9
|
20.1
|
1.0
|
|
ND2
|
A:ASN187
|
4.0
|
21.7
|
1.0
|
|
CA
|
A:ASP206
|
4.0
|
20.3
|
1.0
|
|
OD1
|
A:ASP206
|
4.1
|
17.0
|
1.0
|
|
N
|
A:ASN187
|
4.2
|
22.8
|
1.0
|
|
CB
|
A:ASP206
|
4.3
|
19.1
|
1.0
|
|
C
|
A:ASN205
|
4.5
|
20.9
|
1.0
|
|
CB
|
A:ASN187
|
4.7
|
21.9
|
1.0
|
|
CG
|
A:GLU193
|
4.7
|
22.3
|
1.0
|
|
N
|
A:VAL207
|
4.7
|
22.1
|
1.0
|
|
CG
|
A:GLU185
|
4.7
|
19.5
|
1.0
|
|
C2
|
A:MAN502
|
4.7
|
25.6
|
0.5
|
|
CB
|
A:ASN205
|
4.7
|
20.2
|
1.0
|
|
CB
|
A:VAL189
|
4.7
|
28.4
|
1.0
|
|
C5
|
A:MAN502
|
4.8
|
26.1
|
0.5
|
|
N
|
A:ASP188
|
4.8
|
25.2
|
1.0
|
|
C2
|
A:MAN502
|
4.8
|
28.0
|
0.5
|
|
CA
|
A:ASN187
|
4.8
|
23.8
|
1.0
|
|
CA
|
A:ASN205
|
4.9
|
20.0
|
1.0
|
|
C5
|
A:MAN502
|
4.9
|
29.6
|
0.5
|
|
N
|
A:VAL189
|
4.9
|
24.9
|
1.0
|
|
CB
|
A:GLU193
|
4.9
|
20.4
|
1.0
|
|
Calcium binding site 3 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 3 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca505
b:23.6
occ:1.00
|
O
|
A:HOH643
|
2.3
|
30.5
|
1.0
|
|
OE1
|
A:GLU165
|
2.3
|
21.6
|
1.0
|
|
OD1
|
A:ASP194
|
2.5
|
19.3
|
1.0
|
|
OD2
|
A:ASP194
|
2.6
|
20.0
|
1.0
|
|
O
|
A:HOH595
|
2.6
|
29.6
|
1.0
|
|
CG
|
A:ASP194
|
2.9
|
20.3
|
1.0
|
|
CD
|
A:GLU165
|
3.5
|
19.8
|
1.0
|
|
CA
|
A:CA503
|
4.0
|
22.3
|
1.0
|
|
CB
|
A:GLU165
|
4.0
|
20.1
|
1.0
|
|
CG
|
A:GLU165
|
4.2
|
20.5
|
1.0
|
|
O
|
A:ASP161
|
4.3
|
21.1
|
1.0
|
|
O
|
A:HOH557
|
4.3
|
23.6
|
1.0
|
|
CB
|
A:ASP194
|
4.4
|
19.1
|
1.0
|
|
OD2
|
A:ASP188
|
4.4
|
24.9
|
1.0
|
|
CA
|
A:GLU165
|
4.4
|
21.1
|
1.0
|
|
OE2
|
A:GLU165
|
4.5
|
18.5
|
1.0
|
|
O
|
A:HOH537
|
4.5
|
30.0
|
1.0
|
|
O
|
A:HOH555
|
4.6
|
36.2
|
1.0
|
|
O
|
A:HOH633
|
4.6
|
42.8
|
1.0
|
|
OD2
|
A:ASP161
|
4.8
|
21.7
|
1.0
|
|
OD1
|
A:ASP161
|
5.0
|
20.3
|
1.0
|
|
N
|
A:GLU165
|
5.0
|
19.7
|
1.0
|
|
Calcium binding site 4 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 4 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca603
b:24.3
occ:1.00
|
O
|
B:HOH714
|
2.3
|
24.1
|
1.0
|
|
OD2
|
B:ASP161
|
2.4
|
22.6
|
1.0
|
|
OD2
|
B:ASP194
|
2.4
|
22.6
|
1.0
|
|
O
|
B:GLU193
|
2.5
|
23.5
|
1.0
|
|
OE1
|
B:GLU165
|
2.5
|
23.6
|
1.0
|
|
OE2
|
B:GLU165
|
2.6
|
21.9
|
1.0
|
|
OD2
|
B:ASP188
|
2.6
|
32.7
|
1.0
|
|
OD1
|
B:ASP161
|
2.7
|
21.9
|
1.0
|
|
CG
|
B:ASP161
|
2.9
|
23.5
|
1.0
|
|
CD
|
B:GLU165
|
2.9
|
24.4
|
1.0
|
|
C
|
B:GLU193
|
3.3
|
25.0
|
1.0
|
|
CG
|
B:ASP188
|
3.3
|
34.0
|
1.0
|
|
CG
|
B:ASP194
|
3.6
|
23.1
|
1.0
|
|
CA
|
B:ASP194
|
3.7
|
23.7
|
1.0
|
|
CA
|
B:CA605
|
3.8
|
25.5
|
1.0
|
|
N
|
B:ASP194
|
3.9
|
23.2
|
1.0
|
|
CB
|
B:ASP188
|
4.0
|
33.0
|
1.0
|
|
O
|
B:HOH662
|
4.0
|
30.3
|
1.0
|
|
OD1
|
B:ASP188
|
4.1
|
34.7
|
1.0
|
|
O
|
B:HOH617
|
4.2
|
28.2
|
1.0
|
|
CB
|
B:ASP194
|
4.2
|
22.8
|
1.0
|
|
N
|
B:GLU193
|
4.3
|
28.7
|
1.0
|
|
CA
|
B:GLU193
|
4.4
|
26.7
|
1.0
|
|
CB
|
B:ASP161
|
4.4
|
20.9
|
1.0
|
|
CG
|
B:GLU165
|
4.4
|
24.8
|
1.0
|
|
CA
|
B:ASP188
|
4.5
|
33.1
|
1.0
|
|
OD1
|
B:ASP206
|
4.5
|
25.9
|
1.0
|
|
OD1
|
B:ASP194
|
4.5
|
25.4
|
1.0
|
|
CZ
|
B:PHE168
|
4.6
|
23.6
|
1.0
|
|
N
|
B:GLY166
|
4.7
|
22.0
|
1.0
|
|
O
|
B:ASP161
|
4.8
|
25.2
|
1.0
|
|
C
|
B:ASP194
|
4.9
|
24.3
|
1.0
|
|
CA
|
B:GLU165
|
5.0
|
22.6
|
1.0
|
|
Calcium binding site 5 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 5 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca604
b:29.9
occ:1.00
|
OD2
|
B:ASP206
|
2.3
|
24.2
|
1.0
|
|
OE2
|
B:GLU193
|
2.3
|
30.9
|
1.0
|
|
OE2
|
B:GLU185
|
2.4
|
30.6
|
1.0
|
|
OD1
|
B:ASN187
|
2.5
|
32.4
|
1.0
|
|
OD1
|
B:ASN205
|
2.5
|
27.3
|
1.0
|
|
O
|
B:ASP206
|
2.6
|
24.6
|
1.0
|
|
O3
|
B:MAN602
|
2.6
|
41.9
|
1.0
|
|
O4
|
B:MAN602
|
2.6
|
42.5
|
1.0
|
|
CD
|
B:GLU185
|
3.3
|
32.3
|
1.0
|
|
CG
|
B:ASP206
|
3.3
|
26.1
|
1.0
|
|
C3
|
B:MAN602
|
3.4
|
44.0
|
1.0
|
|
CD
|
B:GLU193
|
3.4
|
28.7
|
1.0
|
|
C4
|
B:MAN602
|
3.4
|
44.9
|
1.0
|
|
CG
|
B:ASN205
|
3.5
|
28.8
|
1.0
|
|
CG
|
B:ASN187
|
3.5
|
33.6
|
1.0
|
|
C
|
B:ASP206
|
3.6
|
25.9
|
1.0
|
|
OE1
|
B:GLU185
|
3.6
|
31.5
|
1.0
|
|
N
|
B:ASP206
|
3.7
|
26.0
|
1.0
|
|
OE1
|
B:GLU193
|
3.8
|
29.4
|
1.0
|
|
ND2
|
B:ASN205
|
3.9
|
29.2
|
1.0
|
|
ND2
|
B:ASN187
|
4.0
|
32.6
|
1.0
|
|
OD1
|
B:ASP206
|
4.1
|
25.9
|
1.0
|
|
CA
|
B:ASP206
|
4.1
|
25.9
|
1.0
|
|
N
|
B:ASN187
|
4.2
|
30.7
|
1.0
|
|
CG2
|
B:VAL189
|
4.2
|
41.2
|
1.0
|
|
CB
|
B:ASP206
|
4.3
|
25.4
|
1.0
|
|
C
|
B:ASN205
|
4.5
|
27.4
|
1.0
|
|
CG
|
B:GLU185
|
4.6
|
31.3
|
1.0
|
|
CG
|
B:GLU193
|
4.7
|
25.8
|
1.0
|
|
CB
|
B:ASN187
|
4.7
|
31.7
|
1.0
|
|
N
|
B:VAL207
|
4.7
|
25.3
|
1.0
|
|
CB
|
B:ASN205
|
4.7
|
28.7
|
1.0
|
|
N
|
B:ASP188
|
4.7
|
33.1
|
1.0
|
|
CB
|
B:VAL189
|
4.7
|
40.8
|
1.0
|
|
C2
|
B:MAN602
|
4.8
|
45.2
|
1.0
|
|
C5
|
B:MAN602
|
4.8
|
45.5
|
1.0
|
|
CB
|
B:GLU193
|
4.8
|
25.8
|
1.0
|
|
CA
|
B:ASN205
|
4.8
|
28.4
|
1.0
|
|
CA
|
B:ASN187
|
4.8
|
32.0
|
1.0
|
|
N
|
B:VAL189
|
4.9
|
36.9
|
1.0
|
|
Calcium binding site 6 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 6 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca605
b:25.5
occ:1.00
|
O
|
B:HOH608
|
2.3
|
20.7
|
1.0
|
|
OE1
|
B:GLU165
|
2.3
|
23.6
|
1.0
|
|
O
|
B:HOH662
|
2.4
|
30.3
|
1.0
|
|
O
|
B:HOH663
|
2.5
|
35.9
|
1.0
|
|
OD2
|
B:ASP194
|
2.5
|
22.6
|
1.0
|
|
OD1
|
B:ASP194
|
2.6
|
25.4
|
1.0
|
|
O
|
B:HOH636
|
2.7
|
29.5
|
1.0
|
|
CG
|
B:ASP194
|
2.9
|
23.1
|
1.0
|
|
CD
|
B:GLU165
|
3.5
|
24.4
|
1.0
|
|
CA
|
B:CA603
|
3.8
|
24.3
|
1.0
|
|
O
|
B:ASP161
|
4.1
|
25.2
|
1.0
|
|
OD2
|
B:ASP188
|
4.2
|
32.7
|
1.0
|
|
CB
|
B:GLU165
|
4.2
|
21.6
|
1.0
|
|
CG
|
B:GLU165
|
4.3
|
24.8
|
1.0
|
|
CB
|
B:ASP194
|
4.4
|
22.8
|
1.0
|
|
OD1
|
B:ASP188
|
4.4
|
34.7
|
1.0
|
|
OE2
|
B:GLU165
|
4.5
|
21.9
|
1.0
|
|
CA
|
B:GLU165
|
4.5
|
22.6
|
1.0
|
|
OD2
|
B:ASP161
|
4.6
|
22.6
|
1.0
|
|
O
|
B:HOH686
|
4.6
|
39.0
|
1.0
|
|
O
|
B:HOH697
|
4.6
|
49.0
|
1.0
|
|
O
|
B:HOH721
|
4.6
|
44.0
|
1.0
|
|
O
|
B:HOH681
|
4.6
|
35.9
|
1.0
|
|
CG
|
B:ASP188
|
4.7
|
34.0
|
1.0
|
|
O
|
B:HOH651
|
4.7
|
38.6
|
1.0
|
|
OD1
|
B:ASP161
|
4.8
|
21.9
|
1.0
|
|
CG
|
B:ASP161
|
4.9
|
23.5
|
1.0
|
|
Calcium binding site 7 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 7 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca703
b:40.7
occ:1.00
|
O
|
C:GLU193
|
2.3
|
38.4
|
1.0
|
|
OD2
|
C:ASP194
|
2.4
|
31.7
|
1.0
|
|
OD2
|
C:ASP188
|
2.4
|
44.0
|
1.0
|
|
OE1
|
C:GLU165
|
2.4
|
45.2
|
1.0
|
|
O
|
C:HOH707
|
2.5
|
25.3
|
1.0
|
|
OD2
|
C:ASP161
|
2.5
|
47.4
|
1.0
|
|
OE2
|
C:GLU165
|
2.6
|
47.1
|
1.0
|
|
CD
|
C:GLU165
|
2.8
|
46.5
|
1.0
|
|
OD1
|
C:ASP161
|
2.9
|
49.5
|
1.0
|
|
CG
|
C:ASP161
|
3.1
|
48.2
|
1.0
|
|
C
|
C:GLU193
|
3.2
|
40.2
|
1.0
|
|
CG
|
C:ASP188
|
3.4
|
47.4
|
1.0
|
|
CG
|
C:ASP194
|
3.5
|
36.8
|
1.0
|
|
CA
|
C:ASP194
|
3.7
|
37.8
|
1.0
|
|
CB
|
C:ASP188
|
3.7
|
46.8
|
1.0
|
|
N
|
C:ASP194
|
3.8
|
39.1
|
1.0
|
|
O
|
C:HOH720
|
3.9
|
39.0
|
1.0
|
|
CA
|
C:CA705
|
4.1
|
42.7
|
1.0
|
|
CB
|
C:ASP194
|
4.1
|
36.7
|
1.0
|
|
N
|
C:GLU193
|
4.2
|
42.2
|
1.0
|
|
CA
|
C:GLU193
|
4.3
|
41.4
|
1.0
|
|
CG
|
C:GLU165
|
4.3
|
47.0
|
1.0
|
|
CZ
|
C:PHE168
|
4.4
|
48.1
|
1.0
|
|
CA
|
C:ASP188
|
4.4
|
47.0
|
1.0
|
|
OD1
|
C:ASP206
|
4.5
|
41.4
|
1.0
|
|
OD1
|
C:ASP194
|
4.5
|
37.4
|
1.0
|
|
OD1
|
C:ASP188
|
4.5
|
48.1
|
1.0
|
|
CB
|
C:ASP161
|
4.6
|
47.3
|
1.0
|
|
N
|
C:GLY166
|
4.8
|
46.9
|
1.0
|
|
O
|
C:HOH756
|
4.8
|
53.5
|
1.0
|
|
O
|
C:ASP161
|
4.9
|
46.5
|
1.0
|
|
C
|
C:ASP194
|
4.9
|
38.1
|
1.0
|
|
CE1
|
C:PHE168
|
4.9
|
47.7
|
1.0
|
|
CB
|
C:GLU193
|
4.9
|
41.5
|
1.0
|
|
CA
|
C:GLU165
|
4.9
|
48.0
|
1.0
|
|
O
|
C:HOH717
|
4.9
|
34.7
|
1.0
|
|
Calcium binding site 8 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 8 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca704
b:44.0
occ:1.00
|
OD2
|
C:ASP206
|
2.2
|
40.5
|
1.0
|
|
O4
|
C:MAN702
|
2.4
|
87.2
|
0.5
|
|
O4
|
C:MAN702
|
2.4
|
82.9
|
0.5
|
|
OE2
|
C:GLU193
|
2.4
|
41.2
|
1.0
|
|
O3
|
C:MAN702
|
2.5
|
87.9
|
0.5
|
|
OD1
|
C:ASN187
|
2.5
|
43.0
|
1.0
|
|
O
|
C:ASP206
|
2.6
|
40.7
|
1.0
|
|
OD1
|
C:ASN205
|
2.6
|
43.7
|
1.0
|
|
OE2
|
C:GLU185
|
2.7
|
56.1
|
1.0
|
|
O3
|
C:MAN702
|
2.9
|
82.7
|
0.5
|
|
C4
|
C:MAN702
|
3.2
|
87.8
|
0.5
|
|
C3
|
C:MAN702
|
3.2
|
88.1
|
0.5
|
|
CD
|
C:GLU185
|
3.3
|
57.0
|
1.0
|
|
CG
|
C:ASP206
|
3.3
|
42.4
|
1.0
|
|
C3
|
C:MAN702
|
3.4
|
82.9
|
0.5
|
|
C4
|
C:MAN702
|
3.4
|
83.1
|
0.5
|
|
CD
|
C:GLU193
|
3.4
|
42.3
|
1.0
|
|
CG
|
C:ASN205
|
3.5
|
45.0
|
1.0
|
|
OE1
|
C:GLU185
|
3.5
|
56.4
|
1.0
|
|
CG
|
C:ASN187
|
3.6
|
46.8
|
1.0
|
|
C
|
C:ASP206
|
3.6
|
42.0
|
1.0
|
|
OE1
|
C:GLU193
|
3.7
|
41.5
|
1.0
|
|
N
|
C:ASP206
|
3.8
|
43.9
|
1.0
|
|
ND2
|
C:ASN205
|
3.8
|
44.4
|
1.0
|
|
OD1
|
C:ASP206
|
4.1
|
41.4
|
1.0
|
|
CA
|
C:ASP206
|
4.1
|
42.8
|
1.0
|
|
ND2
|
C:ASN187
|
4.1
|
45.0
|
1.0
|
|
O
|
C:HOH781
|
4.1
|
50.8
|
1.0
|
|
N
|
C:ASN187
|
4.2
|
50.0
|
1.0
|
|
CB
|
C:ASP206
|
4.3
|
42.2
|
1.0
|
|
C
|
C:ASN205
|
4.6
|
45.2
|
1.0
|
|
CG1
|
C:VAL189
|
4.6
|
46.6
|
1.0
|
|
C5
|
C:MAN702
|
4.6
|
88.0
|
0.5
|
|
CG
|
C:GLU185
|
4.6
|
55.8
|
1.0
|
|
C2
|
C:MAN702
|
4.6
|
88.3
|
0.5
|
|
C5
|
C:MAN702
|
4.6
|
83.0
|
0.5
|
|
N
|
C:ASP188
|
4.7
|
45.8
|
1.0
|
|
CG
|
C:GLU193
|
4.7
|
40.3
|
1.0
|
|
CB
|
C:ASN205
|
4.8
|
44.7
|
1.0
|
|
CB
|
C:ASN187
|
4.8
|
47.6
|
1.0
|
|
N
|
C:VAL207
|
4.8
|
40.4
|
1.0
|
|
C2
|
C:MAN702
|
4.9
|
83.1
|
0.5
|
|
CB
|
C:GLU193
|
4.9
|
41.5
|
1.0
|
|
CA
|
C:ASN205
|
4.9
|
45.1
|
1.0
|
|
CA
|
C:PRO186
|
4.9
|
53.4
|
1.0
|
|
CA
|
C:ASN187
|
5.0
|
47.6
|
1.0
|
|
O2
|
C:MAN702
|
5.0
|
88.3
|
0.5
|
|
N
|
C:VAL189
|
5.0
|
47.3
|
1.0
|
|
Calcium binding site 9 out
of 9 in 1kx0
Go back to
Calcium Binding Sites List in 1kx0
Calcium binding site 9 out
of 9 in the Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Rat Mannose Protein A (H189V I207V) Complexed with Man-A13-Man within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca705
b:42.7
occ:1.00
|
O
|
C:HOH762
|
2.3
|
33.4
|
1.0
|
|
O
|
C:HOH739
|
2.5
|
34.1
|
1.0
|
|
O
|
C:HOH720
|
2.5
|
39.0
|
1.0
|
|
OE1
|
C:GLU165
|
2.5
|
45.2
|
1.0
|
|
OD1
|
C:ASP194
|
2.6
|
37.4
|
1.0
|
|
OD2
|
C:ASP194
|
2.7
|
31.7
|
1.0
|
|
CG
|
C:ASP194
|
3.0
|
36.8
|
1.0
|
|
CD
|
C:GLU165
|
3.7
|
46.5
|
1.0
|
|
CB
|
C:GLU165
|
4.0
|
47.3
|
1.0
|
|
OD2
|
C:ASP188
|
4.1
|
44.0
|
1.0
|
|
CA
|
C:CA703
|
4.1
|
40.7
|
1.0
|
|
CG
|
C:GLU165
|
4.2
|
47.0
|
1.0
|
|
O
|
C:ASP161
|
4.4
|
46.5
|
1.0
|
|
O
|
C:HOH726
|
4.4
|
32.7
|
1.0
|
|
CA
|
C:GLU165
|
4.4
|
48.0
|
1.0
|
|
CB
|
C:ASP194
|
4.5
|
36.7
|
1.0
|
|
O
|
C:HOH750
|
4.7
|
37.4
|
1.0
|
|
OE2
|
C:GLU165
|
4.7
|
47.1
|
1.0
|
|
N
|
C:GLU165
|
4.9
|
48.0
|
1.0
|
|
OD2
|
C:ASP161
|
4.9
|
47.4
|
1.0
|
|
Reference:
K.K.Ng,
A.R.Kolatkar,
S.Park-Snyder,
H.Feinberg,
D.A.Clark,
K.Drickamer,
W.I.Weis.
Orientation of Bound Ligands in Mannose-Binding Proteins. Implications For Multivalent Ligand Recognition. J.Biol.Chem. V. 277 16088 2002.
ISSN: ISSN 0021-9258
PubMed: 11850428
DOI: 10.1074/JBC.M200493200
Page generated: Thu Jul 11 11:37:08 2024
|
