Atomistry » Calcium » PDB 1rpz-1s26 » 1rtp
Atomistry »
  Calcium »
    PDB 1rpz-1s26 »
      1rtp »

Calcium in PDB 1rtp: Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution

Protein crystallography data

The structure of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution, PDB code: 1rtp was solved by C.A.Mcphalen, A.R.Sielecki, B.D.Santarsiero, M.N.G.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.300, 55.000, 156.100, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution (pdb code 1rtp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution, PDB code: 1rtp:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 1 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Ca110

b:4.2
occ:1.00
 OD1 1:ASP51 2.1 6.4 1.0
O 1:PHE57 2.3 4.2 1.0
OD1 1:ASP53 2.3 6.8 1.0
OE1 1:GLU59 2.4 2.8 1.0
OE1 1:GLU62 2.5 2.6 1.0
OE2 1:GLU62 2.6 7.1 1.0
OG 1:SER55 2.7 6.3 1.0
CD 1:GLU62 2.9 2.0 1.0
CG 1:ASP51 3.3 7.8 1.0
CD 1:GLU59 3.3 2.0 1.0
CG 1:ASP53 3.4 8.5 1.0
C 1:PHE57 3.5 3.5 1.0
OE2 1:GLU59 3.6 5.7 1.0
CB 1:SER55 3.7 4.5 1.0
OD2 1:ASP53 3.9 6.4 1.0
N 1:SER55 4.0 6.2 1.0
CB 1:ASP51 4.1 7.8 1.0
CA 1:ASP51 4.1 6.0 1.0
N 1:ASP53 4.2 6.3 1.0
OD2 1:ASP51 4.2 6.6 1.0
C 1:ASP51 4.3 6.8 1.0
N 1:PHE57 4.3 4.7 1.0
CG 1:GLU62 4.3 2.0 1.0
N 1:GLU59 4.4 3.2 1.0
CA 1:ILE58 4.4 4.0 1.0
N 1:ILE58 4.4 4.0 1.0
CA 1:SER55 4.4 2.8 1.0
CA 1:PHE57 4.5 4.9 1.0
N 1:LYS54 4.5 5.1 1.0
O 1:HOH115 4.5 2.3 0.7
N 1:LYS52 4.5 10.1 1.0
CB 1:ASP53 4.5 5.8 1.0
O 1:HOH140 4.5 10.8 1.0
CA 1:ASP53 4.6 6.6 1.0
CG 1:GLU59 4.6 2.6 1.0
C 1:ASP53 4.7 7.3 1.0
N 1:GLY56 4.7 3.2 1.0
O 1:ASP51 4.8 9.2 1.0
C 1:ILE58 4.9 4.3 1.0
C 1:SER55 4.9 6.0 1.0

Calcium binding site 2 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 2 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Ca111

b:6.3
occ:1.00
 O 1:LYS96 2.2 5.2 1.0
OE1 1:GLU101 2.3 6.7 1.0
OD1 1:ASP90 2.3 9.3 1.0
O 1:HOH121 2.3 6.1 1.0
OD1 1:ASP94 2.3 9.9 1.0
OD1 1:ASP92 2.3 11.4 1.0
OE2 1:GLU101 2.5 6.4 1.0
CD 1:GLU101 2.8 4.4 1.0
CG 1:ASP94 3.3 8.1 1.0
C 1:LYS96 3.3 5.7 1.0
CG 1:ASP92 3.4 8.7 1.0
CG 1:ASP90 3.4 8.6 1.0
OD2 1:ASP94 3.7 11.9 1.0
OD2 1:ASP92 3.8 12.4 1.0
CA 1:ASP90 4.1 8.5 1.0
N 1:LYS96 4.1 6.4 1.0
CB 1:ASP90 4.2 8.1 1.0
O 1:HOH125 4.2 7.7 1.0
N 1:ILE97 4.2 3.9 1.0
OD2 1:ASP90 4.2 11.2 1.0
CG 1:GLU101 4.3 5.2 1.0
N 1:ASP94 4.3 12.4 1.0
CA 1:ILE97 4.3 5.4 1.0
CA 1:LYS96 4.3 6.4 1.0
N 1:ASP92 4.3 13.3 1.0
N 1:GLY98 4.4 5.1 1.0
N 1:LYS91 4.5 12.1 1.0
N 1:GLY93 4.6 14.8 1.0
CB 1:ASP94 4.6 11.3 1.0
CB 1:ASP92 4.6 9.5 1.0
C 1:ASP90 4.6 11.1 1.0
CA 1:ASP92 4.8 12.2 1.0
CB 1:LYS96 4.8 7.3 1.0
C 1:ILE97 4.8 4.5 1.0
C 1:ASP92 4.9 16.1 1.0
CA 1:ASP94 4.9 10.8 1.0
N 1:GLY95 4.9 10.4 1.0

Calcium binding site 3 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 3 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Ca110

b:7.5
occ:1.00
 O 2:PHE57 2.2 5.9 1.0
OD1 2:ASP53 2.2 11.8 1.0
OD1 2:ASP51 2.3 7.7 1.0
OE1 2:GLU59 2.3 12.1 1.0
OG 2:SER55 2.4 7.2 1.0
OE1 2:GLU62 2.4 11.0 1.0
OE2 2:GLU62 2.5 12.3 1.0
CD 2:GLU62 2.8 10.5 1.0
CG 2:ASP53 3.3 9.0 1.0
CD 2:GLU59 3.3 14.9 1.0
CG 2:ASP51 3.4 7.1 1.0
C 2:PHE57 3.4 5.0 1.0
CB 2:SER55 3.5 9.2 1.0
OE2 2:GLU59 3.5 8.0 1.0
OD2 2:ASP53 3.8 17.8 1.0
N 2:SER55 3.9 11.3 1.0
OD2 2:ASP51 4.1 13.3 1.0
N 2:ASP53 4.2 10.2 1.0
CA 2:ASP51 4.2 8.9 1.0
CA 2:SER55 4.2 8.9 1.0
CB 2:ASP51 4.3 9.5 1.0
CG 2:GLU62 4.3 10.9 1.0
CA 2:ILE58 4.3 4.1 1.0
N 2:GLU59 4.3 6.0 1.0
N 2:PHE57 4.3 9.4 1.0
N 2:ILE58 4.3 4.9 1.0
C 2:ASP51 4.4 7.6 1.0
CB 2:ASP53 4.4 14.1 1.0
N 2:LYS54 4.4 11.6 1.0
CA 2:PHE57 4.4 8.0 1.0
N 2:LYS52 4.5 8.9 1.0
CA 2:ASP53 4.6 11.2 1.0
O 2:HOH206 4.6 15.8 0.7
CG 2:GLU59 4.7 10.1 1.0
C 2:ASP53 4.7 12.9 1.0
N 2:GLY56 4.7 9.2 1.0
C 2:ILE58 4.8 4.4 1.0
C 2:SER55 4.9 11.4 1.0
C 2:LYS54 5.0 11.6 1.0
O 2:ASP51 5.0 9.6 1.0
CB 2:PHE57 5.0 11.6 1.0

Calcium binding site 4 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 4 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Ca111

b:11.1
occ:1.00
 O 2:HOH148 2.2 13.9 1.0
O 2:LYS96 2.3 7.1 1.0
OD1 2:ASP90 2.3 11.2 1.0
OD1 2:ASP92 2.4 15.1 1.0
OD1 2:ASP94 2.4 16.2 1.0
OE1 2:GLU101 2.5 10.6 1.0
OE2 2:GLU101 2.6 14.5 1.0
CD 2:GLU101 2.9 12.6 1.0
CG 2:ASP94 3.2 17.0 1.0
CG 2:ASP92 3.3 18.7 1.0
CG 2:ASP90 3.4 13.0 1.0
C 2:LYS96 3.5 8.0 1.0
OD2 2:ASP94 3.5 15.3 1.0
OD2 2:ASP92 3.8 22.8 1.0
CA 2:ASP90 4.1 12.6 1.0
N 2:LYS96 4.1 12.1 1.0
N 2:ASP94 4.2 15.8 1.0
CB 2:ASP90 4.2 5.4 1.0
N 2:ASP92 4.2 15.3 1.0
OD2 2:ASP90 4.3 12.5 1.0
N 2:ILE97 4.4 7.6 1.0
CA 2:LYS96 4.4 9.2 1.0
CG 2:GLU101 4.4 7.2 1.0
CB 2:ASP94 4.4 12.5 1.0
C 2:ASP90 4.4 14.2 1.0
CB 2:ASP92 4.4 17.9 1.0
CA 2:ILE97 4.5 8.6 1.0
N 2:GLY93 4.5 17.4 1.0
N 2:LYS91 4.5 15.5 1.0
CA 2:ASP92 4.6 16.4 1.0
N 2:GLY98 4.6 6.8 1.0
CA 2:ASP94 4.7 13.9 1.0
C 2:ASP92 4.7 16.4 1.0
CG 2:LYS96 4.8 9.8 1.0
N 2:GLY95 4.8 13.9 1.0
C 2:ASP94 4.9 16.0 1.0
C 2:ILE97 5.0 7.6 1.0

Calcium binding site 5 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 5 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Ca110

b:9.9
occ:1.00
 OD1 3:ASP53 2.3 15.1 1.0
O 3:PHE57 2.3 7.5 1.0
OD1 3:ASP51 2.3 14.2 1.0
OE1 3:GLU59 2.4 11.0 1.0
OG 3:SER55 2.5 11.4 1.0
OE1 3:GLU62 2.5 7.7 1.0
OE2 3:GLU62 2.6 12.6 1.0
CD 3:GLU62 2.9 9.6 1.0
CD 3:GLU59 3.3 11.7 1.0
CG 3:ASP53 3.4 12.8 1.0
CB 3:SER55 3.4 9.1 1.0
CG 3:ASP51 3.4 11.0 1.0
C 3:PHE57 3.6 7.1 1.0
OE2 3:GLU59 3.6 14.7 1.0
N 3:SER55 3.9 17.5 1.0
OD2 3:ASP53 4.0 17.9 1.0
N 3:ASP53 4.2 16.9 1.0
OD2 3:ASP51 4.2 11.5 1.0
CA 3:ASP51 4.2 10.8 1.0
CA 3:SER55 4.2 16.6 1.0
N 3:PHE57 4.3 8.3 1.0
CG 3:GLU62 4.3 9.8 1.0
CB 3:ASP51 4.3 8.5 1.0
C 3:ASP51 4.4 10.6 1.0
N 3:GLU59 4.4 8.2 1.0
N 3:ILE58 4.5 9.2 1.0
CA 3:ILE58 4.5 7.5 1.0
N 3:LYS54 4.5 16.8 1.0
CA 3:PHE57 4.5 8.6 1.0
N 3:LYS52 4.6 15.3 1.0
CB 3:ASP53 4.6 15.3 1.0
N 3:GLY56 4.6 12.6 1.0
CG 3:GLU59 4.7 10.4 1.0
O 3:HOH200 4.7 28.5 1.0
CA 3:ASP53 4.7 16.4 1.0
C 3:SER55 4.8 14.0 1.0
C 3:ASP53 4.8 18.4 1.0
O 3:ASP51 4.8 11.8 1.0
C 3:LYS54 5.0 20.8 1.0

Calcium binding site 6 out of 6 in 1rtp

Go back to Calcium Binding Sites List in 1rtp
Calcium binding site 6 out of 6 in the Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Refined X-Ray Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Ca111

b:11.4
occ:1.00
 OD1 3:ASP94 2.1 11.7 1.0
O 3:HOH145 2.2 12.6 1.0
OD1 3:ASP90 2.2 13.9 1.0
OE1 3:GLU101 2.3 9.1 1.0
OD1 3:ASP92 2.4 25.3 1.0
O 3:LYS96 2.5 9.4 1.0
OE2 3:GLU101 2.7 10.6 1.0
CD 3:GLU101 2.8 10.6 1.0
CG 3:ASP94 3.1 12.6 1.0
CG 3:ASP90 3.3 16.1 1.0
CG 3:ASP92 3.3 23.9 1.0
C 3:LYS96 3.5 11.5 1.0
OD2 3:ASP94 3.6 10.2 1.0
OD2 3:ASP92 3.8 24.4 1.0
CB 3:ASP90 4.1 16.5 1.0
CA 3:ASP90 4.1 19.1 1.0
O 3:HOH169 4.1 18.5 1.0
N 3:ASP94 4.1 17.1 1.0
OD2 3:ASP90 4.2 13.9 1.0
CG 3:GLU101 4.3 7.6 1.0
CA 3:ILE97 4.3 7.5 1.0
N 3:ILE97 4.3 10.9 1.0
N 3:LYS96 4.4 13.7 1.0
CB 3:ASP94 4.4 14.3 1.0
N 3:ASP92 4.4 21.3 1.0
CA 3:LYS96 4.5 11.0 1.0
CB 3:ASP92 4.6 24.8 1.0
C 3:ASP90 4.6 19.5 1.0
N 3:LYS91 4.6 21.4 1.0
N 3:GLY98 4.6 9.8 1.0
CA 3:ASP94 4.7 14.3 1.0
N 3:GLY93 4.7 20.3 1.0
C 3:ASP92 4.8 22.5 1.0
CA 3:ASP92 4.8 21.8 1.0
N 3:GLY95 4.9 16.2 1.0
CB 3:LYS96 4.9 14.7 1.0
C 3:ILE97 5.0 8.7 1.0

Reference:

C.A.Mcphalen, A.R.Sielecki, B.D.Santarsiero, M.N.James. Refined Crystal Structure of Rat Parvalbumin, A Mammalian Alpha-Lineage Parvalbumin, at 2.0 A Resolution. J.Mol.Biol. V. 235 718 1994.
ISSN: ISSN 0022-2836
PubMed: 8289291
DOI: 10.1006/JMBI.1994.1023
Page generated: Tue Jul 8 01:42:08 2025

Last articles

Mg in 6DBZ
Mg in 6DDZ
Mg in 6DE3
Mg in 6DE2
Mg in 6DDC
Mg in 6DC2
Mg in 6DC6
Mg in 6DCF
Mg in 6DA6
Mg in 6D9S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy