Calcium in PDB 1s10: Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift

All present enzymatic activity of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift:
2.7.7.7;

The structure of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s10 was solved by H.Ling, F.Boudsocq, R.Woodgate, W.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.10
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	98.395, 102.664, 52.340, 90.00, 90.00, 90.00
R / Rfree (%)	21.6 / 23.9

The binding sites of Calcium atom in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift (pdb code 1s10). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift, PDB code: 1s10:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:41.3 occ:1.00 O A:HOH831 2.3 29.3 1.0 OD1 A:ASP105 2.6 34.0 1.0 OE1 A:GLU106 2.7 43.4 1.0 O1A A:DCP804 2.7 26.9 1.0 O A:HOH829 2.8 51.0 1.0 OD1 A:ASP7 2.9 31.2 1.0 OD2 A:ASP7 2.9 27.0 1.0 CG A:ASP7 3.2 28.8 1.0 OD2 A:ASP105 3.3 30.0 1.0 CG A:ASP105 3.3 31.7 1.0 CA A:CA404 3.6 30.1 1.0 PA A:DCP804 3.7 34.7 1.0 CD A:GLU106 3.8 42.1 1.0 O5' A:DCP804 4.0 32.4 1.0 OP1 B:DA1813 4.2 74.6 1.0 CB A:GLU106 4.2 30.6 1.0 O2A A:DCP804 4.2 37.7 1.0 CG A:GLU106 4.4 38.3 1.0 C5' A:DCP804 4.4 33.2 1.0 CB A:ASP7 4.5 27.7 1.0 O A:HOH910 4.5 45.9 1.0 OG A:SER103 4.5 31.6 1.0 O A:ASP105 4.5 26.7 1.0 NZ A:LYS159 4.7 40.0 1.0 C A:ASP105 4.7 27.6 1.0 OE2 A:GLU106 4.8 44.6 1.0 CB A:ASP105 4.8 28.1 1.0 O5' B:DA1813 4.9 72.7 1.0 CA A:ASP7 5.0 26.7 1.0 O1G A:DCP804 5.0 31.2 1.0 P B:DA1813 5.0 73.6 1.0

Calcium binding site 2 out of 2 in the Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Snapshots of Replication Through An Abasic Lesion: Structural Basis For Base Substitution and Frameshift within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca404 b:30.1 occ:1.00 OD2 A:ASP105 2.2 30.0 1.0 OD1 A:ASP7 2.2 31.2 1.0 O A:PHE8 2.2 26.1 1.0 O2B A:DCP804 2.3 26.1 1.0 O1G A:DCP804 2.4 31.2 1.0 O1A A:DCP804 2.4 26.9 1.0 O A:HOH971 3.1 46.5 1.0 O A:HOH970 3.2 73.4 1.0 CG A:ASP7 3.3 28.8 1.0 C A:PHE8 3.4 26.3 1.0 CG A:ASP105 3.4 31.7 1.0 PB A:DCP804 3.4 30.3 1.0 PG A:DCP804 3.6 34.7 1.0 CA A:CA403 3.6 41.3 1.0 PA A:DCP804 3.6 34.7 1.0 O3B A:DCP804 3.7 33.2 1.0 O3A A:DCP804 3.8 31.4 1.0 OD2 A:ASP7 3.9 27.0 1.0 N A:PHE8 4.0 26.4 1.0 OD1 A:ASP105 4.0 34.0 1.0 NZ A:LYS159 4.1 40.0 1.0 C A:ASP7 4.2 26.5 1.0 CA A:PHE8 4.2 27.0 1.0 O5' A:DCP804 4.3 32.4 1.0 C5' A:DCP804 4.3 33.2 1.0 N A:ASP9 4.4 27.4 1.0 O3G A:DCP804 4.4 32.8 1.0 N A:TYR10 4.5 23.8 1.0 CA A:ASP9 4.5 24.8 1.0 CB A:ASP7 4.5 27.7 1.0 O A:ASP7 4.5 25.9 1.0 CB A:ASP105 4.5 28.1 1.0 C A:ASP9 4.6 25.3 1.0 O1B A:DCP804 4.7 28.8 1.0 O2G A:DCP804 4.7 32.5 1.0 N A:PHE11 4.7 24.0 1.0 CA A:ASP7 4.7 26.7 1.0 O A:HOH831 4.8 29.3 1.0 O2A A:DCP804 4.8 37.7 1.0 CB A:PHE8 4.9 24.7 1.0 O A:ASP105 4.9 26.7 1.0 CE A:LYS159 4.9 43.4 1.0

H.Ling, F.Boudsocq, R.Woodgate, W.Yang. Snapshots of Replication Through An Abasic Lesion; Structural Basis For Base Substitutions and Frameshifts. Mol.Cell V. 13 751 2004.
ISSN: ISSN 1097-2765
PubMed: 15023344
DOI: 10.1016/S1097-2765(04)00101-7