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Calcium in PDB 1sw8: Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy (pdb code 1sw8). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy, PDB code: 1sw8:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 1sw8

Go back to Calcium Binding Sites List in 1sw8
Calcium binding site 1 out of 2 in the Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca80

b:1.2
occ:1.00
OD1 A:ASP22 1.0 4.0 1.0
CG A:ASP22 1.8 2.1 1.0
H A:ASP24 1.9 0.6 1.0
H A:GLY23 2.0 0.7 1.0
OD2 A:ASP22 2.3 2.4 1.0
OD1 A:ASP20 2.3 1.0 1.0
O A:THR26 2.4 0.5 1.0
OE2 A:GLU31 2.8 1.9 1.0
OD1 A:ASP24 2.8 1.2 1.0
N A:GLY23 2.8 0.7 1.0
OE1 A:GLU31 2.9 2.3 1.0
N A:ASP24 2.9 0.7 1.0
CD A:GLU31 3.1 1.0 1.0
H A:THR26 3.1 0.8 1.0
CG A:ASP20 3.2 0.7 1.0
CB A:ASP22 3.2 0.8 1.0
H A:GLY25 3.4 0.8 1.0
H A:ASP22 3.4 0.9 1.0
C A:THR26 3.5 0.4 1.0
CA A:GLY23 3.6 0.7 1.0
HA2 A:GLY23 3.6 0.7 1.0
C A:ASP22 3.7 0.7 1.0
HA A:ASP20 3.7 0.4 1.0
HB3 A:ASP24 3.7 1.3 1.0
C A:GLY23 3.7 0.7 1.0
N A:ASP22 3.7 0.8 1.0
CA A:ASP22 3.7 0.7 1.0
CG A:ASP24 3.7 1.3 1.0
HB3 A:ASP22 3.7 2.4 1.0
N A:THR26 3.7 0.4 1.0
OD2 A:ASP20 3.8 1.1 1.0
CA A:ASP24 3.8 0.7 1.0
N A:GLY25 3.8 0.4 1.0
HB2 A:ASP22 3.9 2.1 1.0
CB A:ASP24 3.9 0.8 1.0
HA A:ILE27 4.0 0.4 1.0
C A:ASP24 4.1 0.8 1.0
HD13 A:ILE27 4.2 1.7 1.0
CA A:THR26 4.2 0.4 1.0
CB A:ASP20 4.2 0.7 1.0
CA A:ASP20 4.2 0.4 1.0
H A:LYS21 4.3 0.8 1.0
C A:ASP20 4.4 0.5 1.0
HB A:THR26 4.4 1.3 1.0
N A:LYS21 4.4 0.6 1.0
H A:THR28 4.5 0.4 1.0
N A:ILE27 4.6 0.4 1.0
C A:GLY25 4.6 0.6 1.0
HA3 A:GLY23 4.6 0.8 1.0
C A:LYS21 4.6 0.8 1.0
HB3 A:ASP20 4.6 0.8 1.0
CG A:GLU31 4.6 1.0 1.0
HA A:ASP24 4.7 0.8 1.0
CA A:GLY25 4.8 0.5 1.0
O A:ASP22 4.8 0.8 1.0
HA A:ASP22 4.8 0.8 1.0
CA A:ILE27 4.8 0.4 1.0
HG13 A:ILE27 4.8 0.7 1.0
OD2 A:ASP24 4.9 2.3 1.0
CB A:THR26 4.9 0.5 1.0
O A:GLY23 4.9 0.8 1.0
HG1 A:THR28 4.9 1.4 1.0
HG2 A:GLU31 5.0 1.2 1.0

Calcium binding site 2 out of 2 in 1sw8

Go back to Calcium Binding Sites List in 1sw8
Calcium binding site 2 out of 2 in the Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of the N-Terminal Domain of Human N60D Calmodulin Refined with Paramagnetism Based Strategy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca81

b:0.5
occ:1.00
OD2 A:ASP60 2.2 0.9 1.0
OD1 A:ASP56 2.2 0.6 1.0
O A:THR62 2.2 0.5 1.0
H A:THR62 2.5 1.1 1.0
HB A:THR62 2.6 0.7 1.0
C A:THR62 2.8 0.5 1.0
OD1 A:ASP58 2.8 1.4 1.0
OE1 A:GLU67 2.9 1.5 1.0
CG A:ASP60 2.9 1.0 1.0
OE2 A:GLU67 3.0 1.5 1.0
OD1 A:ASP60 3.0 2.8 1.0
N A:THR62 3.2 0.7 1.0
CA A:THR62 3.2 0.6 1.0
CD A:GLU67 3.3 0.4 1.0
CG A:ASP56 3.3 0.5 1.0
CB A:THR62 3.3 0.7 1.0
H A:GLY61 3.5 0.7 1.0
OD2 A:ASP64 3.6 3.1 1.0
HB2 A:ASP56 3.6 0.4 1.0
CG A:ASP58 3.6 0.9 1.0
HA A:ASP56 3.7 0.3 1.0
N A:ILE63 3.8 0.5 1.0
OD2 A:ASP58 3.8 2.1 1.0
CB A:ASP56 3.9 0.4 1.0
HA A:ILE63 4.0 0.5 1.0
HG1 A:THR62 4.2 1.4 1.0
HA A:THR62 4.3 0.6 1.0
OG1 A:THR62 4.3 0.8 1.0
N A:GLY61 4.3 0.6 1.0
CA A:ASP56 4.3 0.3 1.0
CA A:ILE63 4.3 0.4 1.0
O A:ILE63 4.3 0.7 1.0
HG23 A:THR62 4.3 1.6 1.0
CB A:ASP60 4.4 0.7 1.0
C A:GLY61 4.4 0.7 1.0
OD2 A:ASP56 4.4 0.8 1.0
CG A:ASP64 4.4 1.8 1.0
CG2 A:THR62 4.5 0.7 1.0
H A:GLY59 4.5 0.5 1.0
H A:ILE63 4.5 0.6 1.0
C A:ILE63 4.5 0.4 1.0
HB3 A:ASP60 4.6 1.4 1.0
OD1 A:ASP64 4.7 2.7 1.0
CG A:GLU67 4.8 0.4 1.0
H A:ALA57 4.9 0.5 1.0
CA A:GLY61 4.9 0.6 1.0
HB3 A:ASP56 4.9 0.5 1.0
H A:ASP60 5.0 0.6 1.0

Reference:

I.Bertini, C.Del Bianco, I.Gelis, N.Katsaros, C.Luchinat, G.Parigi, M.Peana, A.Provenzani, M.A.Zoroddu. Experimentally Exploring the Conformational Space Sampled By Domain Reorientation in Calmodulin Proc.Natl.Acad.Sci.Usa V. 101 6841 2004.
ISSN: ISSN 0027-8424
PubMed: 15100408
DOI: 10.1073/PNAS.0308641101
Page generated: Tue Jul 8 02:07:37 2025

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