Calcium in PDB 1t0i: YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase

The structure of YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase, PDB code: 1t0i was solved by D.Liger, M.Graille, C.-Z.Zhou, N.Leulliot, S.Quevillon-Cheruel, K.Blondeau, J.Janin, H.Van Tilbeurgh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	10.00 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	62.801, 109.957, 49.951, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25.4

The binding sites of Calcium atom in the YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase (pdb code 1t0i). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase, PDB code: 1t0i:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:27.3 occ:0.50 O A:HOH260 2.3 22.6 1.0 OE2 A:GLU138 2.3 31.0 1.0 OD2 A:ASP134 2.7 25.5 1.0 OD1 A:ASP134 2.9 25.2 1.0 CG A:ASP134 3.1 26.8 1.0 CD A:GLU138 3.4 30.4 1.0 CG A:GLU138 3.9 31.2 1.0 O A:ASP134 4.1 25.1 1.0 O A:HOH218 4.2 32.0 1.0 O A:HOH226 4.3 32.8 1.0 CA A:CA202 4.4 34.2 1.0 CB A:ASP134 4.5 25.2 1.0 OE1 A:GLU138 4.5 31.4 1.0 C A:ASP134 4.6 23.7 1.0 CA A:ASP134 4.8 23.5 1.0

Calcium binding site 2 out of 2 in the YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of YLR011WP, A Saccharomyces Cerevisiae Na(D)pH-Dependent Fmn Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:34.2 occ:1.00 O A:HOH226 2.4 32.8 1.0 OD2 A:ASP134 2.5 25.5 1.0 O A:HOH218 2.9 32.0 1.0 CG A:ASP134 3.6 26.8 1.0 CB A:ASP134 4.0 25.2 1.0 CA A:CA201 4.4 27.3 0.5 OD1 A:ASP134 4.7 25.2 1.0 O A:HOH260 4.7 22.6 1.0 CA A:ASP134 4.9 23.5 1.0

D.Liger, M.Graille, C.-Z.Zhou, N.Leulliot, S.Quevillon-Cheruel, K.Blondeau, J.Janin, H.Van Tilbeurgh. Crystal Structure and Functional Characterization of Yeast YLR011WP, An Enzyme with Nad(P)H-Fmn and Ferric Iron Reductase Activities J.Biol.Chem. V. 279 34890 2004.
ISSN: ISSN 0021-9258
PubMed: 15184374
DOI: 10.1074/JBC.M405404200