Atomistry » Calcium » PDB 1ukg-1ux6 » 1ux6
Atomistry »
  Calcium »
    PDB 1ukg-1ux6 »
      1ux6 »

Calcium in PDB 1ux6: Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats

Protein crystallography data

The structure of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats, PDB code: 1ux6 was solved by M.Kvansakul, J.C.Adams, E.Hohenester, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 162.340, 162.340, 85.140, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 22.7

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Calcium atom in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats (pdb code 1ux6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats, PDB code: 1ux6:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 1 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:18.1
occ:1.00
O A:CYS928 2.2 19.4 1.0
OD2 A:ASP919 2.3 15.7 1.0
OD2 A:ASP917 2.3 15.2 1.0
O A:ILE934 2.3 20.1 1.0
O A:ASN931 2.4 18.6 1.0
OD2 A:ASP926 2.4 20.4 1.0
OD1 A:ASP926 2.7 20.6 1.0
CG A:ASP926 2.9 19.1 1.0
C A:CYS928 3.3 18.8 1.0
C A:ASN931 3.3 20.1 1.0
CG A:ASP917 3.4 19.0 1.0
CG A:ASP919 3.4 18.1 1.0
C A:ILE934 3.5 23.8 1.0
OD1 A:ASP917 3.7 19.1 1.0
OD1 A:ASP919 4.0 18.2 1.0
N A:ASN931 4.0 19.1 1.0
CA A:CA2002 4.0 17.6 1.0
CA A:SER935 4.1 29.4 1.0
N A:PRO929 4.2 20.3 1.0
N A:VAL932 4.2 20.4 1.0
N A:SER935 4.2 26.2 1.0
CA A:ASN931 4.2 19.6 1.0
CB A:CYS928 4.2 19.1 1.0
CA A:CYS928 4.2 19.1 1.0
CA A:VAL932 4.3 19.6 1.0
CB A:SER935 4.3 31.4 1.0
CA A:PRO929 4.4 19.0 1.0
CB A:ASP926 4.4 19.4 1.0
N A:ILE934 4.4 21.5 1.0
C A:PRO929 4.5 17.9 1.0
CB A:ASP919 4.5 16.9 1.0
N A:CYS928 4.5 17.8 1.0
CA A:ILE934 4.5 21.9 1.0
CB A:ASN931 4.6 21.2 1.0
CB A:ASP917 4.6 17.5 1.0
C A:VAL932 4.6 21.2 1.0
O A:PRO929 4.7 16.5 1.0
O A:HOH2268 4.9 41.2 1.0
N A:GLU930 4.9 16.6 1.0
O A:HOH2154 4.9 17.0 1.0
O A:VAL932 5.0 19.4 1.0

Calcium binding site 2 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 2 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:17.6
occ:1.00
OD1 A:ASP915 2.2 19.5 1.0
OD1 A:ASP917 2.3 19.1 1.0
OD2 A:ASP926 2.3 20.4 1.0
OD1 A:ASP919 2.4 18.2 1.0
O A:VAL921 2.4 20.2 1.0
O A:HOH2154 2.4 17.0 1.0
CG A:ASP919 3.2 18.1 1.0
CG A:ASP917 3.3 19.0 1.0
CG A:ASP915 3.4 20.9 1.0
CG A:ASP926 3.4 19.1 1.0
C A:VAL921 3.5 20.7 1.0
OD2 A:ASP919 3.5 15.7 1.0
OD2 A:ASP917 3.6 15.2 1.0
CB A:ASP926 3.8 19.4 1.0
N A:VAL921 4.0 20.4 1.0
CA A:CA2001 4.0 18.1 1.0
N A:ASP919 4.1 19.1 1.0
OD2 A:ASP915 4.1 21.9 1.0
CA A:VAL921 4.2 21.0 1.0
CB A:VAL921 4.3 22.3 1.0
N A:ASP917 4.3 16.9 1.0
CB A:ASP915 4.4 20.8 1.0
CA A:ASP915 4.4 19.9 1.0
CB A:ASP919 4.4 16.9 1.0
OD1 A:ASP926 4.5 20.6 1.0
O A:PRO929 4.5 16.5 1.0
N A:HIS918 4.5 17.4 1.0
N A:PRO922 4.5 21.3 1.0
C A:PRO922 4.5 22.3 1.0
CB A:ASP917 4.6 17.5 1.0
C A:ASP915 4.6 18.7 1.0
OD1 A:ASP923 4.6 18.8 1.0
CA A:ASP919 4.7 19.4 1.0
N A:ASP923 4.7 21.7 1.0
O A:PRO922 4.7 21.5 1.0
N A:PHE916 4.8 19.0 1.0
N A:SER920 4.8 19.1 1.0
CA A:PRO922 4.8 21.6 1.0
CA A:ASP917 4.8 17.2 1.0
C A:ASP917 4.8 17.1 1.0
C A:ASP919 4.8 20.2 1.0
CA A:PRO929 4.9 19.0 1.0

Calcium binding site 3 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 3 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2003

b:23.4
occ:1.00
OD1 A:ASP902 2.3 19.8 1.0
OD1 A:ASP906 2.3 26.7 1.0
O A:ARG908 2.3 21.8 1.0
O A:HOH2150 2.4 28.7 1.0
OD1 A:ASP904 2.4 31.7 1.0
O A:HOH2239 2.5 31.2 1.0
CG A:ASP906 3.2 27.3 1.0
CG A:ASP904 3.3 30.4 1.0
CG A:ASP902 3.4 22.3 1.0
C A:ARG908 3.4 22.5 1.0
OD2 A:ASP904 3.6 34.5 1.0
OD2 A:ASP906 3.6 26.0 1.0
N A:ARG908 4.0 23.5 1.0
OD2 A:ASP902 4.0 22.0 1.0
CA A:ARG908 4.1 24.4 1.0
CB A:ARG908 4.1 26.1 1.0
N A:ASP906 4.1 26.8 1.0
N A:ASP904 4.4 25.4 1.0
CB A:ASP906 4.4 26.2 1.0
CA A:ASP902 4.4 21.9 1.0
CB A:ASP902 4.4 20.5 1.0
OD1 A:ASP910 4.4 21.1 1.0
N A:GLY909 4.5 20.5 1.0
N A:GLY905 4.6 27.0 1.0
CB A:ASP904 4.6 28.7 1.0
C A:ASP902 4.6 21.8 1.0
C A:GLY909 4.7 20.3 1.0
CA A:ASP906 4.7 25.7 1.0
N A:SER903 4.8 22.1 1.0
N A:GLY907 4.8 23.5 1.0
CA A:GLY909 4.8 20.5 1.0
O A:GLY909 4.8 19.0 1.0
CA A:ASP904 4.8 27.7 1.0
C A:ASP904 4.8 27.9 1.0
N A:ASP910 4.9 19.1 1.0
O A:HOH2218 4.9 34.6 1.0
CG A:ARG908 5.0 30.3 1.0
C A:ASP906 5.0 25.8 1.0

Calcium binding site 4 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 4 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2004

b:18.5
occ:1.00
O A:ILE885 2.2 20.7 1.0
OD1 A:ASP879 2.2 20.5 1.0
OD1 A:ASP883 2.3 20.6 1.0
OD1 A:ASP881 2.3 15.3 1.0
OD2 A:ASP890 2.4 18.1 1.0
O A:HOH2136 2.5 19.6 1.0
CG A:ASP883 3.2 22.5 1.0
CG A:ASP881 3.3 16.9 1.0
C A:ILE885 3.3 22.9 1.0
CG A:ASP879 3.4 19.6 1.0
CG A:ASP890 3.4 19.4 1.0
OD2 A:ASP883 3.7 20.4 1.0
OD2 A:ASP881 3.7 18.1 1.0
CB A:ASP890 3.9 19.8 1.0
N A:ILE885 3.9 23.1 1.0
CA A:ILE885 4.0 22.5 1.0
CA A:CA2005 4.1 18.0 1.0
CB A:ILE885 4.1 21.2 1.0
N A:ASP883 4.1 20.3 1.0
OD2 A:ASP879 4.1 20.1 1.0
CA A:ASP879 4.4 19.2 1.0
N A:ASP881 4.4 16.5 1.0
N A:PRO886 4.4 23.3 1.0
CB A:ASP883 4.4 21.1 1.0
CB A:ASP879 4.5 20.0 1.0
O A:ARG893 4.5 17.8 1.0
C A:PRO886 4.5 21.9 1.0
OD1 A:ASP890 4.5 20.6 1.0
OD1 A:ASP887 4.6 18.4 1.0
C A:ASP879 4.6 18.7 1.0
N A:ASN882 4.6 20.5 1.0
CB A:ASP881 4.6 17.3 1.0
CA A:ASP883 4.7 21.4 1.0
O A:PRO886 4.7 24.0 1.0
N A:ASP887 4.7 22.7 1.0
CA A:PRO886 4.7 23.5 1.0
N A:GLY884 4.7 22.7 1.0
N A:ASP880 4.8 19.2 1.0
C A:ASP883 4.8 21.4 1.0
CA A:ASP881 4.9 17.5 1.0
C A:ASP881 4.9 19.3 1.0
CG2 A:ILE885 5.0 20.8 1.0

Calcium binding site 5 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 5 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2005

b:18.0
occ:1.00
OD2 A:ASP881 2.2 18.1 1.0
O A:CYS892 2.2 17.7 1.0
OD2 A:ASP883 2.3 20.4 1.0
OD1 A:ASN897 2.4 16.2 1.0
OD2 A:ASP890 2.4 18.1 1.0
O A:VAL895 2.4 19.1 1.0
OD1 A:ASP890 2.6 20.6 1.0
CG A:ASP890 2.9 19.4 1.0
C A:CYS892 3.3 17.4 1.0
CG A:ASP881 3.3 16.9 1.0
CG A:ASP883 3.4 22.5 1.0
C A:VAL895 3.4 19.2 1.0
CG A:ASN897 3.5 18.3 1.0
N A:ASN897 3.6 18.5 1.0
OD1 A:ASP881 3.8 15.3 1.0
CB A:CYS892 3.8 18.6 1.0
OD1 A:ASP883 3.9 20.6 1.0
CA A:PRO896 3.9 19.6 1.0
CA A:CA2004 4.1 18.5 1.0
CA A:CYS892 4.1 19.0 1.0
N A:PRO896 4.1 19.4 1.0
C A:PRO896 4.1 18.7 1.0
N A:VAL895 4.2 18.7 1.0
NE2 A:GLN900 4.3 18.2 1.0
N A:ARG893 4.3 17.7 1.0
CB A:ASP890 4.3 19.8 1.0
N A:CYS892 4.4 18.6 1.0
CB A:ASN897 4.4 19.1 1.0
ND2 A:ASN897 4.4 17.4 1.0
CA A:VAL895 4.4 18.9 1.0
CB A:ASP883 4.4 21.1 1.0
CA A:ASN897 4.5 19.2 1.0
C A:ARG893 4.5 18.7 1.0
CA A:ARG893 4.5 18.8 1.0
O A:ARG893 4.6 17.8 1.0
CB A:ASP881 4.6 17.3 1.0
O A:ASN897 4.7 19.1 1.0
C A:ASN897 4.8 19.9 1.0
O A:HOH2136 4.9 19.6 1.0
N A:LEU894 4.9 17.0 1.0

Calcium binding site 6 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 6 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2006

b:21.6
occ:1.00
OD2 A:ASP868 2.3 17.0 1.0
OD1 A:ASN882 2.3 24.2 1.0
OD2 A:ASP870 2.4 24.6 1.0
O A:ASP879 2.4 19.6 1.0
O A:HOH2294 2.4 24.1 1.0
OD2 A:ASP877 2.5 20.8 1.0
OD1 A:ASP877 2.6 23.4 1.0
CG A:ASP877 2.9 20.7 1.0
CG A:ASN882 3.2 25.1 1.0
CG A:ASP868 3.4 18.7 1.0
C A:ASP879 3.5 18.7 1.0
CG A:ASP870 3.5 26.0 1.0
ND2 A:ASN882 3.6 25.7 1.0
OD1 A:ASP868 3.8 19.4 1.0
CA A:CA2007 4.0 21.5 1.0
OD1 A:ASP870 4.1 25.0 1.0
N A:ASN882 4.2 20.5 1.0
CB A:ASP879 4.3 20.0 1.0
N A:ASP880 4.3 19.2 1.0
CA A:ASP879 4.3 19.2 1.0
CB A:ASN882 4.3 21.9 1.0
CB A:ASP877 4.4 22.3 1.0
CA A:ASP880 4.4 18.4 1.0
CA A:ASN882 4.4 21.7 1.0
N A:ASP879 4.5 20.1 1.0
C A:ASP880 4.5 18.0 1.0
CB A:ASP870 4.6 25.3 1.0
CB A:ASP868 4.7 20.0 1.0
O A:HOH2118 4.8 17.8 1.0
O A:ASP880 4.8 19.8 1.0
N A:ASP881 4.9 16.5 1.0
O A:HOH2333 4.9 46.0 1.0
CG A:ASP879 4.9 19.6 1.0
O A:HOH2299 5.0 26.0 1.0

Calcium binding site 7 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 7 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2007

b:21.5
occ:1.00
O A:LYS872 2.3 25.2 1.0
OD1 A:ASP866 2.3 22.8 1.0
OD1 A:ASP868 2.3 19.4 1.0
OD2 A:ASP877 2.4 20.8 1.0
O A:HOH2118 2.4 17.8 1.0
OD1 A:ASP870 2.4 25.0 1.0
CG A:ASP870 3.2 26.0 1.0
CG A:ASP868 3.2 18.7 1.0
CG A:ASP866 3.4 22.9 1.0
C A:LYS872 3.4 23.9 1.0
CG A:ASP877 3.5 20.7 1.0
OD2 A:ASP870 3.5 24.6 1.0
OD2 A:ASP868 3.5 17.0 1.0
CB A:ASP877 4.0 22.3 1.0
OD2 A:ASP866 4.0 22.5 1.0
CA A:CA2006 4.0 21.6 1.0
N A:LYS872 4.0 25.0 1.0
N A:ASP870 4.0 25.6 1.0
CA A:LYS872 4.2 25.6 1.0
CB A:LYS872 4.3 26.9 1.0
CA A:ASP866 4.3 21.7 1.0
N A:ASP868 4.3 20.9 1.0
CB A:ASP870 4.4 25.3 1.0
CB A:ASP866 4.4 21.6 1.0
OD1 A:ASP874 4.4 17.3 1.0
N A:GLY873 4.5 23.4 1.0
C A:GLY873 4.5 22.1 1.0
O A:ASP880 4.5 19.8 1.0
OD1 A:ASP877 4.5 23.4 1.0
N A:LYS869 4.5 24.1 1.0
CB A:ASP868 4.5 20.0 1.0
C A:ASP866 4.6 21.8 1.0
CA A:ASP870 4.6 25.6 1.0
CA A:GLY873 4.7 22.9 1.0
N A:ASP874 4.7 20.8 1.0
O A:GLY873 4.7 21.3 1.0
N A:GLY871 4.7 26.1 1.0
N A:HIS867 4.8 20.6 1.0
CA A:ASP868 4.8 21.4 1.0
C A:ASP868 4.8 23.3 1.0
C A:ASP870 4.9 26.3 1.0
CA A:ASP880 5.0 18.4 1.0

Calcium binding site 8 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 8 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2008

b:23.1
occ:1.00
O A:HOH2142 2.2 28.7 1.0
O A:ASP877 2.3 25.3 1.0
OD2 A:ASP887 2.3 21.6 1.0
OD1 A:ASP880 2.3 21.7 1.0
O A:ASP874 2.3 20.9 1.0
O A:HOH2280 2.5 27.8 1.0
OD2 A:ASP880 2.7 22.5 1.0
CG A:ASP880 2.8 19.5 1.0
C A:ASP877 3.4 24.2 1.0
C A:ASP874 3.4 20.9 1.0
CG A:ASP887 3.5 19.4 1.0
CA A:ASP874 4.0 20.2 1.0
OD1 A:ASP887 4.1 18.4 1.0
N A:ASP877 4.1 24.2 1.0
CA A:ASP877 4.2 24.3 1.0
CB A:ASP877 4.2 22.3 1.0
CB A:ASP880 4.3 19.7 1.0
N A:HIS878 4.4 24.5 1.0
CB A:ASP874 4.5 17.4 1.0
O A:HOH2353 4.5 49.9 1.0
CA A:HIS878 4.6 25.4 1.0
N A:ALA875 4.6 21.2 1.0
CB A:ASP887 4.6 21.7 1.0
N A:ASP880 4.7 19.2 1.0
O A:HOH2348 4.7 45.1 1.0
C A:HIS878 4.8 22.4 1.0
CA A:ASP880 4.9 18.4 1.0
CA A:ALA875 4.9 22.6 1.0
N A:ASP879 5.0 20.1 1.0
C A:ALA875 5.0 22.3 1.0

Calcium binding site 9 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 9 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2009

b:20.6
occ:1.00
OD2 A:ASP847 2.2 19.7 1.0
OD1 A:ASN861 2.3 19.3 1.0
OD2 A:ASP845 2.3 23.4 1.0
O A:CYS856 2.3 22.0 1.0
O A:VAL859 2.4 21.9 1.0
OD2 A:ASP854 2.5 25.5 1.0
OD1 A:ASP854 2.7 26.0 1.0
CG A:ASP854 3.0 25.6 1.0
CG A:ASP847 3.3 21.5 1.0
C A:CYS856 3.4 22.5 1.0
CG A:ASP845 3.4 22.5 1.0
C A:VAL859 3.4 23.3 1.0
CG A:ASN861 3.5 20.0 1.0
N A:ASN861 3.6 21.4 1.0
OD1 A:ASP845 3.8 22.2 1.0
OD1 A:ASP847 3.8 20.1 1.0
CB A:CYS856 3.9 22.8 1.0
CA A:PRO860 4.0 23.6 1.0
CA A:CA2010 4.0 22.9 1.0
N A:PRO860 4.1 23.2 1.0
C A:PRO860 4.1 22.2 1.0
CA A:CYS856 4.2 23.9 1.0
NE2 A:GLN864 4.2 21.6 1.0
N A:VAL859 4.2 24.7 1.0
N A:PRO857 4.3 23.9 1.0
CB A:ASN861 4.4 20.0 1.0
ND2 A:ASN861 4.4 21.2 1.0
C A:PRO857 4.4 24.6 1.0
CA A:ASN861 4.4 20.6 1.0
CA A:VAL859 4.4 22.8 1.0
CB A:ASP847 4.4 20.2 1.0
CB A:ASP854 4.4 26.4 1.0
N A:CYS856 4.5 23.6 1.0
CA A:PRO857 4.5 24.2 1.0
O A:PRO857 4.5 25.0 1.0
O A:ASN861 4.6 19.2 1.0
CB A:ASP845 4.6 23.0 1.0
C A:ASN861 4.7 20.4 1.0
N A:TYR858 4.8 24.4 1.0
O A:HOH2122 4.9 22.3 1.0

Calcium binding site 10 out of 16 in 1ux6

Go back to Calcium Binding Sites List in 1ux6
Calcium binding site 10 out of 16 in the Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2010

b:22.9
occ:1.00
OD1 A:ASP845 2.2 22.2 1.0
OD1 A:ASP843 2.3 23.0 1.0
O A:HIS849 2.3 20.2 1.0
OD2 A:ASP854 2.3 25.5 1.0
OD1 A:ASP847 2.4 20.1 1.0
O A:HOH2122 2.5 22.3 1.0
CG A:ASP845 3.2 22.5 1.0
CG A:ASP847 3.3 21.5 1.0
CG A:ASP843 3.4 23.1 1.0
C A:HIS849 3.4 22.7 1.0
CG A:ASP854 3.5 25.6 1.0
OD2 A:ASP845 3.6 23.4 1.0
OD2 A:ASP847 3.6 19.7 1.0
N A:HIS849 3.9 23.7 1.0
CA A:CA2009 4.0 20.6 1.0
CB A:ASP854 4.0 26.4 1.0
CA A:HIS849 4.1 23.0 1.0
N A:ASP847 4.1 20.9 1.0
OD2 A:ASP843 4.2 21.7 1.0
CB A:HIS849 4.2 21.9 1.0
CA A:ASP843 4.4 26.6 1.0
CB A:ASP843 4.4 24.4 1.0
N A:ASP845 4.4 23.9 1.0
O A:PRO857 4.4 25.0 1.0
CB A:ASP847 4.5 20.2 1.0
N A:GLN850 4.5 23.9 1.0
OD1 A:ASP854 4.5 26.0 1.0
CB A:ASP845 4.6 23.0 1.0
C A:GLN850 4.6 24.6 1.0
N A:GLU846 4.6 21.6 1.0
C A:ASP843 4.7 27.1 1.0
CA A:ASP847 4.7 21.1 1.0
N A:ASN851 4.7 24.6 1.0
CA A:GLN850 4.7 25.3 1.0
N A:GLY848 4.7 22.7 1.0
OD1 A:ASN851 4.8 25.8 1.0
CA A:ASP845 4.8 22.7 1.0
C A:ASP845 4.8 23.3 1.0
N A:ILE844 4.9 28.1 1.0
O A:GLN850 4.9 23.8 1.0
C A:ASP847 4.9 21.7 1.0

Reference:

M.Kvansakul, J.C.Adams, E.Hohenester. Structure of A Thrombospondin C-Terminal Fragment Reveals A Novel Calcium Core in the Type 3 Repeats Embo J. V. 23 1223 2004.
ISSN: ISSN 0261-4189
PubMed: 15014436
DOI: 10.1038/SJ.EMBOJ.7600166
Page generated: Thu Jul 11 23:41:08 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy