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Calcium in PDB 1vch: Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus

Enzymatic activity of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus

All present enzymatic activity of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus:
2.4.2.7;

Protein crystallography data

The structure of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus, PDB code: 1vch was solved by P.H.Rehse, T.H.Tahirov, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.98 / 1.94
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 167.419, 61.405, 102.389, 90.00, 93.97, 90.00
R / Rfree (%) 23.2 / 25.9

Other elements in 1vch:

The structure of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus (pdb code 1vch). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus, PDB code: 1vch:

Calcium binding site 1 out of 1 in 1vch

Go back to Calcium Binding Sites List in 1vch
Calcium binding site 1 out of 1 in the Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1006

b:36.7
occ:1.00
 O C:HOH2013 2.3 32.1 1.0
OE2 C:GLU54 2.3 35.1 1.0
O C:HOH2020 2.4 35.4 1.0
O C:HOH2009 2.4 28.8 1.0
O C:HOH2025 2.5 38.2 1.0
CD C:GLU54 3.4 39.5 1.0
CG C:GLU54 3.9 27.5 1.0
O C:HOH2012 4.1 32.1 1.0
NE2 C:GLN121 4.2 28.2 1.0
OE1 C:GLU54 4.5 37.0 1.0
O C:HOH2015 4.5 33.8 1.0
OE1 C:GLN121 4.7 37.1 1.0
O C:HOH2019 4.7 35.2 1.0
CB C:GLU54 4.7 22.8 1.0
CD C:GLN121 4.9 37.1 1.0

Reference:

P.H.Rehse, T.H.Tahirov. Crystal Structure of A Phosphoribosyltransferase-Related Protein From Thermus Thermophilus To Be Published.
Page generated: Tue Jul 8 02:58:30 2025

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