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Calcium in PDB 2c4s: Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan

Calcium Binding Sites:

The binding sites of Calcium atom in the Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan (pdb code 2c4s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan, PDB code: 2c4s:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2c4s

Go back to Calcium Binding Sites List in 2c4s
Calcium binding site 1 out of 2 in the Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca5

b:0.0
occ:1.00
O A:HOH13 2.0 0.0 0.5
O A:HOH12 2.5 0.0 1.0
O A:HOH10 2.5 0.0 1.0
O A:HOH11 2.5 0.0 1.0
O A:HOH14 2.6 0.0 1.0
O6B A:GCU1 2.6 0.0 1.0
H4 A:GCU1 3.6 0.0 1.0
C6 A:GCU1 3.7 0.0 1.0
O5 A:GCU1 3.8 0.0 1.0
C5 A:GCU1 4.2 0.0 1.0
C4 A:GCU1 4.4 0.0 1.0
H2 A:GCU1 4.4 0.0 1.0
O6A A:GCU1 4.8 0.0 1.0
C1 A:GCU1 4.9 0.0 1.0
H8B A:ASG2 4.9 0.0 1.0
HN A:ASG2 4.9 0.0 1.0

Calcium binding site 2 out of 2 in 2c4s

Go back to Calcium Binding Sites List in 2c4s
Calcium binding site 2 out of 2 in the Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium Chondroitin 4-Sulfate. Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca6

b:0.0
occ:1.00
O A:HOH20 2.0 0.0 0.5
O A:HOH19 2.5 0.0 1.0
O A:HOH17 2.5 0.0 1.0
O A:HOH18 2.5 0.0 1.0
OSB A:ASG2 2.5 0.0 1.0
O A:HOH21 2.6 0.0 1.0
O6B A:GCU3 2.6 0.0 1.0
OSA A:ASG2 3.4 0.0 1.0
S A:ASG2 3.5 0.0 1.0
H4 A:GCU3 3.6 0.0 1.0
C6 A:GCU3 3.7 0.0 1.0
O5 A:GCU3 3.8 0.0 1.0
OSC A:ASG2 4.2 0.0 1.0
C5 A:GCU3 4.2 0.0 1.0
C4 A:GCU3 4.4 0.0 1.0
H2 A:GCU3 4.4 0.0 1.0
H4 A:ASG2 4.5 0.0 1.0
O6A A:GCU3 4.8 0.0 1.0
O4 A:ASG2 4.8 0.0 1.0
C1 A:GCU3 4.9 0.0 1.0
H8B A:ASG4 4.9 0.0 1.0
HN A:ASG4 4.9 0.0 1.0

Reference:

J.J.Cael, W.T.Winter, S.Arnott. Calcium Chondroitin 4-Sulfate: Molecular Conformation and Organization of Polysaccharide Chains in A Proteoglycan. J.Mol.Biol. V. 125 21 1978.
ISSN: ISSN 0022-2836
PubMed: 712856
DOI: 10.1016/0022-2836(78)90252-8
Page generated: Fri Jul 12 09:23:58 2024

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