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Calcium in PDB 2ds5: Structure of the Zbd in the Orthorhomibic Crystal From

Protein crystallography data

The structure of Structure of the Zbd in the Orthorhomibic Crystal From, PDB code: 2ds5 was solved by H.K.Song, E.Y.Park, B.G.Lee, S.B.Hong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 32.523, 43.399, 67.719, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.1

Other elements in 2ds5:

The structure of Structure of the Zbd in the Orthorhomibic Crystal From also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the Zbd in the Orthorhomibic Crystal From (pdb code 2ds5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of the Zbd in the Orthorhomibic Crystal From, PDB code: 2ds5:

Calcium binding site 1 out of 1 in 2ds5

Go back to Calcium Binding Sites List in 2ds5
Calcium binding site 1 out of 1 in the Structure of the Zbd in the Orthorhomibic Crystal From


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Zbd in the Orthorhomibic Crystal From within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca299

b:21.2
occ:1.00
O B:GLY9 2.6 20.2 1.0
C B:GLY9 3.7 21.0 1.0
O B:HOH560 4.1 59.3 1.0
CA B:LYS10 4.4 22.6 1.0
N B:LYS10 4.5 21.8 1.0
CA B:GLY9 4.6 19.3 1.0
N B:LEU11 4.8 21.3 1.0
C B:LYS10 4.9 21.7 1.0

Reference:

E.Y.Park, B.G.Lee, S.B.Hong, H.W.Kim, H.Jeon, H.K.Song. Structural Basis of Sspb-Tail Recognition By the Zinc Binding Domain of Clpx. J.Mol.Biol. V. 367 514 2007.
ISSN: ISSN 0022-2836
PubMed: 17258768
DOI: 10.1016/J.JMB.2007.01.003
Page generated: Tue Jul 8 05:06:22 2025

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