Calcium in PDB 2jd9: Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form.

The structure of Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form., PDB code: 2jd9 was solved by D.W.Abbott, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.8
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.765, 42.630, 98.681, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 24

The binding sites of Calcium atom in the Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form. (pdb code 2jd9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form., PDB code: 2jd9:

Calcium binding site 1 out of 1 in the Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Pectin Binding Carbohydrate Binding Module Determined in An Orthorhombic Crystal Form. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1146 b:27.4 occ:1.00 O A:ASN28 2.3 14.5 1.0 O A:ASP33 2.3 25.4 1.0 O A:ASN129 2.4 17.6 1.0 O A:HOH2046 2.5 39.5 1.0 OD1 A:ASP31 2.5 18.2 1.0 OG1 A:THR36 2.5 19.6 1.0 O A:THR36 2.8 17.8 1.0 CG A:ASP31 3.4 17.6 1.0 C A:THR36 3.4 18.4 1.0 C A:ASP33 3.4 27.3 1.0 C A:ASN28 3.5 16.1 1.0 C A:ASN129 3.6 17.8 1.0 OD2 A:ASP31 3.6 20.1 1.0 CB A:THR36 3.7 18.2 1.0 CA A:THR36 3.9 20.1 1.0 N A:THR36 3.9 21.8 1.0 N A:ASP33 4.0 27.8 1.0 CA A:ASP33 4.1 27.4 1.0 N A:ARG37 4.2 17.1 1.0 CB A:ASP33 4.2 26.8 1.0 CA A:ASN28 4.2 15.0 1.0 CA A:ASN129 4.3 17.7 1.0 CB A:ASN28 4.3 15.7 1.0 CG A:GLU130 4.4 25.1 1.0 N A:ILE29 4.4 16.6 1.0 N A:VAL34 4.5 27.1 1.0 CA A:ILE29 4.5 18.5 1.0 N A:GLU130 4.6 17.8 1.0 N A:ASP31 4.6 21.8 1.0 C A:ILE29 4.7 19.7 1.0 CA A:ARG37 4.7 16.2 1.0 CB A:ASP31 4.7 21.8 1.0 CA A:VAL34 4.7 27.8 1.0 CG2 A:THR36 4.7 21.8 1.0 O A:HOH2049 4.8 26.1 1.0 CA A:GLU130 4.8 18.4 1.0 CB A:ASN129 4.8 18.2 1.0 O A:ILE29 4.9 21.0 1.0 C A:VAL34 4.9 26.9 1.0

D.W.Abbott, S.Hyrnuik, A.B.Boraston. Identification and Characterization of A Novel Periplasmic Polygalacturonic Acid Binding Protein From Yersinia Enterolitica J.Mol.Biol. V. 367 1023 2007.
ISSN: ISSN 0022-2836
PubMed: 17292916
DOI: 10.1016/J.JMB.2007.01.030