Atomistry » Calcium » PDB 2jdk-2jnx » 2jkh
Atomistry »
  Calcium »
    PDB 2jdk-2jnx »
      2jkh »

Calcium in PDB 2jkh: Factor Xa - Cation Inhibitor Complex

Enzymatic activity of Factor Xa - Cation Inhibitor Complex

All present enzymatic activity of Factor Xa - Cation Inhibitor Complex:
3.4.21.6;

Protein crystallography data

The structure of Factor Xa - Cation Inhibitor Complex, PDB code: 2jkh was solved by L.M.Salonen, C.Bucher, D.W.Banner, J.Benz, W.Haap, J.L.Mary, W.B.Schweizer, P.Seiler, O.Kuster, F.Diederich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.45 / 1.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.910, 74.120, 77.180, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 22.1

Other elements in 2jkh:

The structure of Factor Xa - Cation Inhibitor Complex also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Factor Xa - Cation Inhibitor Complex (pdb code 2jkh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Factor Xa - Cation Inhibitor Complex, PDB code: 2jkh:

Calcium binding site 1 out of 1 in 2jkh

Go back to Calcium Binding Sites List in 2jkh
Calcium binding site 1 out of 1 in the Factor Xa - Cation Inhibitor Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Factor Xa - Cation Inhibitor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1245

b:9.0
occ:1.00
O A:GLN75 2.2 25.2 1.0
OD1 A:ASP70 2.3 20.8 1.0
OE1 A:GLU80 2.3 21.4 1.0
O A:ASN72 2.4 18.7 1.0
O A:HOH2077 2.6 30.9 1.0
O A:HOH2087 2.7 24.6 1.0
CG A:ASP70 3.3 19.9 1.0
CD A:GLU80 3.3 23.9 1.0
C A:GLN75 3.4 25.3 1.0
C A:ASN72 3.5 19.1 1.0
CG A:GLU80 3.7 22.7 1.0
OD2 A:ASP70 3.8 23.4 1.0
N A:ASN72 4.0 19.4 1.0
N A:GLU77 4.1 29.4 1.0
N A:GLN75 4.2 23.0 1.0
CA A:ASN72 4.3 19.1 1.0
CA A:GLN75 4.3 24.2 1.0
N A:GLU76 4.4 26.5 1.0
N A:THR73 4.4 18.8 1.0
O A:HOH2095 4.4 37.4 1.0
OE2 A:GLU80 4.4 23.3 1.0
CA A:GLU76 4.4 28.5 1.0
CA A:THR73 4.4 20.2 1.0
O A:HOH2074 4.5 27.9 1.0
CB A:ASP70 4.5 18.2 1.0
CB A:ASN72 4.6 18.8 1.0
N A:ARG71 4.6 18.0 1.0
CB A:GLN75 4.6 23.4 1.0
CA A:ASP70 4.6 18.1 1.0
CB A:GLU77 4.7 30.2 1.0
C A:THR73 4.7 20.8 1.0
C A:GLU76 4.8 28.8 1.0

Reference:

L.M.Salonen, C.Bucher, D.W.Banner, W.Haap, J.L.Mary, J.Benz, O.Kuster, P.Seiler, W.B.Schweizer, F.Diederich. Cation-Pi Interactions at the Active Site of Factor Xa: Dramatic Enhancement Upon Stepwise N-Alkylation of Ammonium Ions. Angew.Chem.Int.Ed.Engl. V. 48 811 2009.
ISSN: ISSN 1433-7851
PubMed: 19101972
DOI: 10.1002/ANIE.200804695
Page generated: Fri Jul 12 13:47:00 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy