Calcium in PDB 2k3h: Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A

The binding sites of Calcium atom in the Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A (pdb code 2k3h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A, PDB code: 2k3h:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1 b:0.0 occ:1.00 H A:ASP419 2.2 12.2 1.0 HA A:ALA418 2.3 52.2 1.0 OD1 A:ASP476 2.4 52.1 1.0 OD1 A:ASP413 2.8 20.1 1.0 OD1 A:ASP419 2.8 42.5 1.0 OD2 A:ASP413 2.8 3.2 1.0 O A:GLU475 2.8 34.1 1.0 OD1 A:ASP474 2.8 34.2 1.0 N A:ASP419 2.9 53.4 1.0 OD2 A:ASP474 3.1 33.5 1.0 CG A:ASP413 3.1 4.4 1.0 CA A:ALA418 3.2 75.4 1.0 HA A:ASP476 3.2 43.2 1.0 CG A:ASP474 3.3 41.3 1.0 C A:ALA418 3.5 24.4 1.0 HB3 A:MET412 3.5 51.2 1.0 CG A:ASP476 3.6 35.4 1.0 C A:GLU475 3.6 72.2 1.0 HB2 A:ASP419 3.6 1.4 1.0 CG A:ASP419 3.7 72.4 1.0 CA A:ASP419 3.9 72.4 1.0 CB A:ASP419 4.0 14.1 1.0 CA A:ASP476 4.0 50.4 1.0 N A:ALA418 4.1 60.4 1.0 HB1 A:ALA418 4.1 1.0 1.0 N A:ASP476 4.1 22.2 1.0 H A:GLU475 4.2 51.4 1.0 CB A:ASP476 4.2 22.4 1.0 HB3 A:ASP476 4.2 25.2 1.0 CB A:ALA418 4.3 24.4 1.0 O A:LEU417 4.3 70.0 1.0 CA A:CA2 4.3 0.0 1.0 O A:ASP419 4.3 40.3 1.0 HB2 A:MET412 4.4 12.1 1.0 CB A:MET412 4.4 34.4 1.0 N A:GLU475 4.4 22.5 1.0 C A:ASP419 4.4 40.2 1.0 C A:LEU417 4.5 42.2 1.0 OD2 A:ASP476 4.6 42.4 1.0 O A:ALA418 4.6 73.5 1.0 H A:ALA418 4.6 13.2 1.0 CB A:ASP413 4.7 12.5 1.0 HB3 A:ALA418 4.7 22.0 1.0 CA A:GLU475 4.7 31.4 1.0 HG3 A:MET412 4.7 73.1 1.0 H A:ASP413 4.7 62.3 1.0 CB A:ASP474 4.8 72.2 1.0 HA A:ASP419 4.8 24.1 1.0 OD2 A:ASP419 4.8 54.5 1.0 N A:ASP413 5.0 25.2 1.0 H A:ASP476 5.0 54.4 1.0

Calcium binding site 2 out of 2 in the Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structural Determinants For CA2+ and PIP2 Binding By the C2A Domain of Rabphilin-3A within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca2 b:0.0 occ:1.00 OD2 A:ASP476 2.6 42.4 1.0 O A:MET412 2.8 54.4 1.0 OD2 A:ASP474 2.8 33.5 1.0 OD1 A:ASP413 2.8 20.1 1.0 OD1 A:ASP476 2.8 52.1 1.0 OE1 A:GLU482 2.8 74.0 1.0 HB3 A:MET412 2.9 51.2 1.0 CG A:ASP476 2.9 35.4 1.0 C A:MET412 3.1 5.4 1.0 HA A:ASP413 3.2 11.5 1.0 HB2 A:GLU482 3.5 34.4 1.0 N A:ASP413 3.6 25.2 1.0 HA A:MET412 3.7 44.5 1.0 CB A:MET412 3.7 34.4 1.0 CA A:MET412 3.7 42.4 1.0 CA A:ASP413 3.9 32.1 1.0 CD A:GLU482 3.9 31.4 1.0 CG A:ASP413 3.9 4.4 1.0 CG A:ASP474 4.0 41.3 1.0 HG3 A:GLU482 4.0 41.4 1.0 SD A:MET412 4.1 52.3 1.0 H A:ASP413 4.2 62.3 1.0 CG A:GLU482 4.3 65.2 1.0 CA A:CA1 4.3 0.0 1.0 CB A:ASP476 4.4 22.4 1.0 CB A:GLU482 4.4 13.3 1.0 HB3 A:ASP474 4.5 63.3 1.0 HB2 A:MET412 4.5 12.1 1.0 HB3 A:ASP476 4.5 25.2 1.0 CB A:ASP413 4.5 12.5 1.0 CG A:MET412 4.6 42.1 1.0 HA A:ASN481 4.6 63.3 1.0 H A:GLU482 4.7 55.0 1.0 HB2 A:ASP476 4.8 42.2 1.0 OD1 A:ASP474 4.8 34.2 1.0 CB A:ASP474 4.9 72.2 1.0 OD2 A:ASP413 4.9 3.2 1.0 N A:GLU482 4.9 72.2 1.0 OE2 A:GLU482 5.0 23.3 1.0

N.Coudevylle, P.Montaville, A.Leonov, M.Zweckstetter, S.Becker. Structural Determinants For CA2+ and Phosphatidylinositol 4,5-Bisphosphate Binding By the C2A Domain of Rabphilin-3A. J.Biol.Chem. V. 283 35918 2008.
ISSN: ISSN 0021-9258
PubMed: 18945677
DOI: 10.1074/JBC.M804094200