Calcium in PDB 2o39: Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp)

The structure of Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp), PDB code: 2o39 was solved by D.B.Persson, D.M.Reiter, N.Arnberg, T.Stehle, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.85
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	106.140, 106.140, 68.320, 90.00, 90.00, 120.00
R / Rfree (%)	23.8 / 27.3

The binding sites of Calcium atom in the Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp) (pdb code 2o39). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp), PDB code: 2o39:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca3081 b:54.5 occ:1.00 OD2 C:ASP57 2.8 55.7 1.0 OD1 C:ASP58 2.8 44.4 1.0 CG C:ASP57 3.4 55.7 1.0 OD1 C:ASP57 3.8 57.1 1.0 O C:ASP57 3.8 55.5 1.0 CG C:ASP58 4.0 47.2 1.0 C C:ASP57 4.0 54.7 1.0 N C:ASP58 4.3 55.1 1.0 CA C:ASP58 4.3 53.7 1.0 CB C:ASP57 4.5 55.5 1.0 CA C:ASP57 4.7 54.2 1.0 CB C:ASP58 4.8 50.1 1.0 OD2 C:ASP58 4.9 46.0 1.0 N C:ASP57 4.9 54.0 1.0

Calcium binding site 2 out of 3 in the Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca3081 b:53.6 occ:1.00 OD1 D:ASP57 2.7 59.1 1.0 OD1 D:ASP58 3.0 47.7 1.0 CG D:ASP57 3.4 57.4 1.0 OD2 D:ASP57 3.5 57.9 1.0 CG D:ASP58 4.1 46.7 1.0 N D:ASP58 4.6 51.2 1.0 C D:ASP57 4.7 51.5 1.0 CA D:ASP58 4.7 50.1 1.0 OD2 D:ASP58 4.8 44.8 1.0 O D:ASP57 4.8 50.5 1.0 CB D:ASP57 4.8 55.1 1.0

Calcium binding site 3 out of 3 in the Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human Adenovirus Type 11 Knob in Complex with Domains SCR1 and SCR2 of CD46 (Membrane Cofactor Protein, Mcp) within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca3082 b:67.7 occ:1.00 O D:ALA76 2.7 41.7 1.0 OD1 D:ASP70 2.8 54.9 1.0 OD2 D:ASP70 3.4 51.8 1.0 CG D:ASP70 3.5 51.9 1.0 C D:ALA76 3.9 43.4 1.0 N D:ALA76 4.5 44.4 1.0 CA D:ALA76 4.6 43.9 1.0 CB D:ASP70 4.9 51.6 1.0 CB D:ALA76 4.9 44.2 1.0 N D:VAL77 4.9 43.7 1.0

B.D.Persson, D.M.Reiter, M.Marttila, Y.F.Mei, J.M.Casasnovas, N.Arnberg, T.Stehle. Adenovirus Type 11 Binding Alters the Conformation of Its Receptor CD46. Nat.Struct.Mol.Biol. V. 14 164 2007.
ISSN: ISSN 1545-9993
PubMed: 17220899
DOI: 10.1038/NSMB1190