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Calcium in PDB 2pr7: Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution

Protein crystallography data

The structure of Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution, PDB code: 2pr7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.19 / 1.44
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 29.149, 45.153, 60.777, 100.72, 103.86, 103.31
R / Rfree (%) 16.8 / 19.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution (pdb code 2pr7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution, PDB code: 2pr7:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2pr7

Go back to Calcium Binding Sites List in 2pr7
Calcium binding site 1 out of 2 in the Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca137

b:24.5
occ:0.50
OD2 A:ASP7 2.2 30.0 1.0
OD1 A:ASP98 2.4 27.6 1.0
O A:HOH141 2.4 24.7 1.0
O A:ALA9 2.4 25.0 1.0
O A:HOH204 2.4 41.5 1.0
O A:HOH233 2.7 49.9 1.0
CG A:ASP7 3.2 26.1 1.0
CG A:ASP98 3.3 26.1 1.0
OD2 A:ASP98 3.5 31.3 1.0
C A:ALA9 3.6 22.9 1.0
O A:HOH188 3.7 38.4 1.0
O A:HOH148 3.9 27.9 1.0
CB A:ASP7 4.0 25.2 1.0
O A:HOH248 4.0 54.6 1.0
OD1 A:ASP7 4.0 29.7 1.0
O A:HOH172 4.1 36.7 1.0
OD1 A:ASP97 4.2 23.4 1.0
CA A:ALA9 4.4 22.2 1.0
CB A:ALA9 4.4 21.6 1.0
N A:GLY10 4.5 24.3 1.0
OG A:SER99 4.5 26.6 0.5
N A:ALA9 4.6 20.0 1.0
CA A:GLY10 4.6 24.2 1.0
CB A:ASP98 4.6 21.5 1.0
O A:HOH152 4.7 28.4 1.0
N A:ASP98 4.7 17.6 1.0
O A:HOH202 4.8 44.1 1.0
CG A:ASP97 4.9 22.1 1.0
CG2 A:VAL11 4.9 23.9 1.0

Calcium binding site 2 out of 2 in 2pr7

Go back to Calcium Binding Sites List in 2pr7
Calcium binding site 2 out of 2 in the Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Uncharacterized Protein (NP_599989.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato at 1.44 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca137

b:23.2
occ:0.50
OD2 B:ASP7 2.3 26.2 1.0
OD1 B:ASP98 2.3 33.1 1.0
O B:ALA9 2.3 25.4 1.0
O B:HOH169 2.4 37.8 1.0
O B:HOH140 2.4 24.0 1.0
O B:HOH210 3.0 50.0 1.0
CG B:ASP98 3.3 27.7 1.0
CG B:ASP7 3.3 22.9 1.0
C B:ALA9 3.5 22.5 1.0
OD2 B:ASP98 3.6 31.5 1.0
O B:HOH195 3.7 42.6 1.0
O B:HOH152 3.9 30.1 1.0
CB B:ASP7 4.0 24.8 1.0
OD1 B:ASP7 4.2 28.0 1.0
OD1 B:ASP97 4.2 21.6 1.0
O B:HOH173 4.2 37.2 1.0
CA B:ALA9 4.4 22.2 1.0
N B:GLY10 4.4 24.1 1.0
CB B:ALA9 4.5 21.2 1.0
CA B:GLY10 4.5 24.0 1.0
OG B:SER99 4.6 28.6 0.5
N B:ALA9 4.6 20.7 1.0
CB B:ASP98 4.6 18.8 1.0
O B:HOH145 4.7 27.2 1.0
N B:ASP98 4.7 17.8 1.0
O B:HOH185 4.8 40.8 1.0
CG B:ASP97 4.9 25.5 1.0
CG2 B:VAL11 5.0 24.8 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 07:46:26 2025

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