Calcium in PDB 2qvf: Mouse E-Cadherin Domains 1,2

The structure of Mouse E-Cadherin Domains 1,2, PDB code: 2qvf was solved by K.J.Carroll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	134.711, 42.669, 58.132, 90.00, 111.97, 90.00
R / Rfree (%)	23 / 28.6

The binding sites of Calcium atom in the Mouse E-Cadherin Domains 1,2 (pdb code 2qvf). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Mouse E-Cadherin Domains 1,2, PDB code: 2qvf:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Mouse E-Cadherin Domains 1,2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mouse E-Cadherin Domains 1,2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca701 b:27.2 occ:1.00 OD1 B:ASP136 2.4 25.4 1.0 O B:GLN101 2.4 29.2 1.0 OD1 B:ASP103 2.4 28.4 1.0 OD1 B:ASP100 2.4 28.7 1.0 OE2 B:GLU11 2.4 36.7 1.0 OE2 B:GLU69 2.8 27.8 1.0 OE1 B:GLU69 2.8 28.5 1.0 CD B:GLU69 3.2 28.2 1.0 CG B:ASP136 3.4 25.4 1.0 CG B:ASP100 3.5 28.9 1.0 CD B:GLU11 3.5 36.9 1.0 C B:GLN101 3.6 29.2 1.0 CG B:ASP103 3.6 28.5 1.0 N B:GLN101 3.8 29.2 1.0 OE1 B:GLU11 3.8 36.7 1.0 ND2 B:ASN104 3.9 28.0 1.0 OD2 B:ASP100 4.0 28.9 1.0 CA B:CA703 4.0 27.0 1.0 CB B:ASP136 4.1 25.6 1.0 N B:ASP103 4.1 28.6 1.0 OD2 B:ASP103 4.3 28.6 1.0 CA B:GLN101 4.3 29.3 1.0 OD2 B:ASP136 4.3 25.3 1.0 CA B:ASP136 4.3 25.7 1.0 NE B:ARG68 4.6 28.2 1.0 CG B:GLU69 4.6 28.0 1.0 N B:ASN102 4.6 29.1 1.0 CB B:ASP100 4.7 28.9 1.0 CA B:ASP100 4.7 29.0 1.0 C B:ASP100 4.7 29.1 1.0 CB B:ASP103 4.7 28.5 1.0 CB B:GLN101 4.8 29.3 1.0 CG B:GLU11 4.8 37.0 1.0 CA B:ASP103 4.8 28.5 1.0 CA B:ASN102 4.8 28.9 1.0 N B:ASN104 4.9 28.2 1.0 CB B:ARG68 5.0 28.4 1.0

Calcium binding site 2 out of 4 in the Mouse E-Cadherin Domains 1,2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Mouse E-Cadherin Domains 1,2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca702 b:25.4 occ:1.00 OD2 B:ASP136 2.3 25.3 1.0 OD1 B:ASN102 2.4 28.9 1.0 O B:ASN104 2.4 27.9 1.0 OD2 B:ASP195 2.4 22.5 1.0 O B:ASN143 2.4 26.4 1.0 OD1 B:ASP134 2.8 23.9 1.0 OD2 B:ASP134 2.9 23.8 1.0 CG B:ASP134 3.2 23.8 1.0 CG B:ASP195 3.2 22.7 1.0 CG B:ASP136 3.4 25.4 1.0 CG B:ASN102 3.5 28.9 1.0 C B:ASN104 3.6 27.9 1.0 C B:ASN143 3.6 26.4 1.0 CB B:ASP195 3.8 22.9 1.0 CB B:ASP136 3.9 25.6 1.0 OD1 B:ASP195 4.1 22.3 1.0 N B:ASN104 4.2 28.2 1.0 ND2 B:ASN102 4.2 28.9 1.0 CA B:ASN104 4.3 28.0 1.0 CA B:ASN143 4.4 26.8 1.0 CB B:ASN143 4.4 26.9 1.0 CD1 B:LEU201 4.4 23.4 1.0 OD1 B:ASP136 4.5 25.4 1.0 CB B:ASN104 4.5 28.0 1.0 N B:ARG105 4.6 27.7 1.0 N B:ALA144 4.7 26.0 1.0 CB B:ASN102 4.7 28.9 1.0 CA B:ASN102 4.7 28.9 1.0 CB B:ASP134 4.7 23.8 1.0 CD B:PRO106 4.8 26.9 1.0 CA B:ARG105 4.8 27.6 1.0 C B:ASN102 4.8 28.8 1.0 CA B:ALA144 4.8 25.5 1.0 N B:ASP103 4.9 28.6 1.0 C B:ARG105 5.0 27.2 1.0 N B:PRO106 5.0 26.9 1.0

Calcium binding site 3 out of 4 in the Mouse E-Cadherin Domains 1,2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Mouse E-Cadherin Domains 1,2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca703 b:27.0 occ:1.00 OD1 B:ASP67 2.3 29.5 1.0 OE1 B:GLU69 2.5 28.5 1.0 OD2 B:ASP103 2.6 28.6 1.0 OE1 B:GLU11 2.7 36.7 1.0 CG B:ASP103 3.3 28.5 1.0 OD1 B:ASP103 3.3 28.4 1.0 CG B:ASP67 3.4 29.4 1.0 CD B:GLU11 3.5 36.9 1.0 CD B:GLU69 3.7 28.2 1.0 OE2 B:GLU11 3.8 36.7 1.0 CA B:CA701 4.0 27.2 1.0 ND2 B:ASN104 4.0 28.0 1.0 N B:ARG68 4.2 28.6 1.0 OD2 B:ASP67 4.2 29.7 1.0 CA B:ASP67 4.3 29.0 1.0 ND2 B:ASN12 4.3 36.8 1.0 OD1 B:ASN12 4.3 36.8 1.0 N B:GLU69 4.4 28.2 1.0 CB B:ASP67 4.4 29.1 1.0 CB B:GLU69 4.4 28.1 1.0 CG B:GLU69 4.5 28.0 1.0 OE2 B:GLU69 4.5 27.8 1.0 C B:ASP67 4.6 28.8 1.0 CG B:ASN12 4.8 37.2 1.0 CB B:ASP103 4.8 28.5 1.0 CG B:GLU11 4.8 37.0 1.0

Calcium binding site 4 out of 4 in the Mouse E-Cadherin Domains 1,2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Mouse E-Cadherin Domains 1,2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca704 b:20.0 occ:1.00 OD1 B:ASP180 2.4 20.7 1.0 OE2 B:GLU182 2.4 22.9 1.0 OE2 B:GLU119 2.5 23.3 1.0 O B:HOH815 2.5 34.5 1.0 OE1 B:GLU119 2.8 22.7 1.0 CD B:GLU119 2.9 22.6 1.0 CG B:ASP180 3.4 20.5 1.0 CD B:GLU182 3.4 22.8 1.0 CG B:GLU182 3.8 21.7 1.0 OD2 B:ASP180 4.1 20.4 1.0 CG B:GLU119 4.4 21.9 1.0 CB B:ASP180 4.4 20.5 1.0 CA B:ASP180 4.5 20.5 1.0 OE1 B:GLU182 4.5 22.6 1.0 N B:ARG181 4.5 20.7 1.0 N B:GLU182 4.8 20.8 1.0 C B:ASP180 4.9 20.6 1.0

K.J.Carroll, K.J.Carroll. N/A N/A.