Calcium in PDB 2raq: Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
Protein crystallography data
The structure of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205, PDB code: 2raq
was solved by
F.Forouhar,
M.Su,
X.Xu,
J.Seetharaman,
L.Mao,
R.Xiao,
L.-C.Ma,
K.Conover,
M.C.Baran,
T.B.Acton,
G.T.Montelione,
C.H.Arrowsmith,
J.F.Hunt,
L.Tong,
Northeast Structural Genomics Consortium (Nesg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
80.58 /
3.11
|
Space group
|
P 42 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
113.569,
113.569,
114.530,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.6 /
28
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
(pdb code 2raq). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the
Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205, PDB code: 2raq:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 1 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca98
b:46.8
occ:1.00
|
OD2
|
A:ASP45
|
2.6
|
59.9
|
1.0
|
OE2
|
A:GLU43
|
3.1
|
56.7
|
1.0
|
CD
|
A:GLU43
|
3.2
|
53.2
|
1.0
|
OE1
|
A:GLU43
|
3.4
|
55.9
|
1.0
|
CG
|
A:ASP45
|
3.8
|
58.2
|
1.0
|
CG
|
A:GLU43
|
3.9
|
50.5
|
1.0
|
OD1
|
A:ASP45
|
4.3
|
60.3
|
1.0
|
CB
|
A:ASP45
|
5.0
|
56.5
|
1.0
|
|
Calcium binding site 2 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 2 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca99
b:48.6
occ:1.00
|
OG
|
A:SER78
|
2.7
|
43.1
|
1.0
|
OD1
|
A:ASP12
|
2.7
|
47.5
|
1.0
|
CG
|
A:ASP12
|
3.6
|
45.5
|
1.0
|
CB
|
A:SER78
|
3.7
|
43.6
|
1.0
|
OD2
|
A:ASP12
|
3.7
|
47.2
|
1.0
|
OD1
|
A:ASP80
|
4.2
|
42.2
|
1.0
|
N
|
A:SER78
|
4.6
|
44.2
|
1.0
|
CB
|
A:HIS77
|
4.7
|
46.4
|
1.0
|
CA
|
A:SER78
|
4.7
|
43.8
|
1.0
|
CB
|
A:ASP12
|
4.9
|
43.9
|
1.0
|
C
|
A:HIS77
|
4.9
|
45.2
|
1.0
|
CG2
|
G:ILE44
|
5.0
|
61.2
|
1.0
|
|
Calcium binding site 3 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 3 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca100
b:75.0
occ:1.00
|
OE2
|
A:GLU91
|
2.3
|
57.7
|
1.0
|
O
|
B:THR93
|
3.1
|
59.8
|
1.0
|
O
|
A:HOH103
|
3.4
|
27.3
|
1.0
|
CD
|
A:GLU91
|
3.5
|
57.6
|
1.0
|
CB
|
A:GLU91
|
3.9
|
57.1
|
1.0
|
OE1
|
A:GLU81
|
4.0
|
48.7
|
1.0
|
C
|
B:THR93
|
4.1
|
58.9
|
1.0
|
OG1
|
B:THR93
|
4.2
|
58.7
|
1.0
|
OE1
|
A:GLU91
|
4.2
|
56.7
|
1.0
|
CG
|
A:GLU91
|
4.3
|
58.1
|
1.0
|
CG2
|
G:THR40
|
4.5
|
39.7
|
1.0
|
N
|
B:THR94
|
4.8
|
59.7
|
1.0
|
CA
|
B:THR94
|
4.8
|
60.3
|
1.0
|
O
|
A:GLU91
|
5.0
|
58.1
|
1.0
|
|
Calcium binding site 4 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 4 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca101
b:70.0
occ:1.00
|
OE2
|
G:GLU91
|
2.6
|
66.5
|
1.0
|
O
|
A:THR93
|
2.7
|
63.8
|
1.0
|
CD
|
G:GLU91
|
3.7
|
63.4
|
1.0
|
CB
|
G:GLU91
|
3.8
|
60.6
|
1.0
|
C
|
A:THR93
|
3.9
|
63.8
|
1.0
|
CG
|
G:GLU91
|
4.3
|
61.4
|
1.0
|
CA
|
A:THR94
|
4.5
|
65.0
|
1.0
|
OE1
|
G:GLU81
|
4.6
|
51.9
|
1.0
|
N
|
A:THR94
|
4.7
|
64.5
|
1.0
|
OE1
|
G:GLU91
|
4.7
|
64.2
|
1.0
|
|
Calcium binding site 5 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 5 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca98
b:37.9
occ:1.00
|
OD1
|
B:ASP12
|
2.6
|
49.0
|
1.0
|
OG
|
B:SER78
|
2.7
|
47.8
|
1.0
|
CG
|
B:ASP12
|
3.4
|
48.1
|
1.0
|
OD2
|
B:ASP12
|
3.4
|
49.1
|
1.0
|
CB
|
B:SER78
|
3.8
|
49.1
|
1.0
|
OD1
|
B:ASP80
|
4.1
|
51.4
|
1.0
|
OD2
|
B:ASP80
|
4.4
|
52.3
|
1.0
|
N
|
B:SER78
|
4.7
|
49.8
|
1.0
|
CG
|
B:ASP80
|
4.7
|
51.3
|
1.0
|
CA
|
B:SER78
|
4.8
|
49.2
|
1.0
|
CB
|
B:ASP12
|
4.8
|
46.0
|
1.0
|
CB
|
B:HIS77
|
4.9
|
51.7
|
1.0
|
|
Calcium binding site 6 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 6 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca99
b:48.2
occ:1.00
|
OD2
|
B:ASP45
|
2.3
|
67.9
|
1.0
|
OE2
|
B:GLU43
|
2.8
|
58.4
|
1.0
|
CD
|
B:GLU43
|
2.9
|
55.9
|
1.0
|
OE1
|
B:GLU43
|
3.0
|
55.2
|
1.0
|
CG
|
B:ASP45
|
3.5
|
65.1
|
1.0
|
CG
|
B:GLU43
|
3.7
|
55.3
|
1.0
|
OD1
|
B:ASP45
|
4.1
|
67.0
|
1.0
|
CB
|
B:ASP45
|
4.7
|
62.6
|
1.0
|
|
Calcium binding site 7 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 7 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca100
b:70.8
occ:1.00
|
OE2
|
B:GLU91
|
2.3
|
57.3
|
1.0
|
O
|
C:THR93
|
2.8
|
56.7
|
1.0
|
CD
|
B:GLU91
|
3.3
|
54.2
|
1.0
|
C
|
C:THR93
|
3.7
|
56.7
|
1.0
|
CG2
|
A:THR40
|
3.9
|
40.2
|
1.0
|
CB
|
B:GLU91
|
3.9
|
50.1
|
1.0
|
OE1
|
B:GLU81
|
4.0
|
56.2
|
1.0
|
OE1
|
B:GLU91
|
4.1
|
56.9
|
1.0
|
CG
|
B:GLU91
|
4.2
|
50.1
|
1.0
|
CA
|
C:THR94
|
4.2
|
57.3
|
1.0
|
N
|
C:THR94
|
4.4
|
57.1
|
1.0
|
CB
|
C:THR94
|
4.4
|
57.4
|
1.0
|
CB
|
A:THR40
|
4.6
|
40.0
|
1.0
|
OG1
|
C:THR93
|
4.7
|
57.6
|
1.0
|
CA
|
C:THR93
|
4.7
|
56.8
|
1.0
|
N
|
C:THR93
|
4.8
|
56.2
|
1.0
|
OG1
|
A:THR40
|
4.8
|
40.5
|
1.0
|
|
Calcium binding site 8 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 8 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca98
b:82.0
occ:1.00
|
O
|
D:THR93
|
2.5
|
63.8
|
1.0
|
OE2
|
C:GLU91
|
2.9
|
63.1
|
1.0
|
C
|
D:THR93
|
3.7
|
63.1
|
1.0
|
CB
|
C:GLU91
|
3.8
|
53.8
|
1.0
|
CD
|
C:GLU91
|
4.0
|
61.2
|
1.0
|
CG2
|
B:THR40
|
4.2
|
48.2
|
1.0
|
OE1
|
C:GLU81
|
4.2
|
63.0
|
1.0
|
CA
|
D:THR94
|
4.3
|
66.3
|
1.0
|
N
|
D:THR94
|
4.4
|
64.7
|
1.0
|
CG
|
C:GLU91
|
4.5
|
56.8
|
1.0
|
CB
|
D:THR94
|
4.5
|
66.6
|
1.0
|
OG1
|
B:THR40
|
4.6
|
48.1
|
1.0
|
CB
|
B:THR40
|
4.7
|
47.8
|
1.0
|
N
|
D:THR93
|
4.9
|
60.2
|
1.0
|
CA
|
D:THR93
|
4.9
|
61.4
|
1.0
|
OG1
|
D:THR93
|
5.0
|
59.1
|
1.0
|
|
Calcium binding site 9 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 9 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca98
b:78.0
occ:1.00
|
OE2
|
D:GLU91
|
2.4
|
59.8
|
1.0
|
O
|
E:THR93
|
2.5
|
62.6
|
1.0
|
CD
|
D:GLU91
|
3.6
|
57.9
|
1.0
|
C
|
E:THR93
|
3.7
|
62.9
|
1.0
|
CB
|
D:GLU91
|
4.2
|
57.3
|
1.0
|
CA
|
E:THR94
|
4.2
|
64.5
|
1.0
|
OE1
|
D:GLU81
|
4.3
|
60.9
|
1.0
|
N
|
E:THR94
|
4.3
|
63.6
|
1.0
|
OE1
|
D:GLU91
|
4.4
|
56.1
|
1.0
|
CG
|
D:GLU91
|
4.5
|
57.4
|
1.0
|
CA
|
E:THR93
|
4.9
|
62.5
|
1.0
|
OG1
|
E:THR93
|
4.9
|
63.0
|
1.0
|
CB
|
E:THR94
|
5.0
|
64.8
|
1.0
|
|
Calcium binding site 10 out
of 14 in 2raq
Go back to
Calcium Binding Sites List in 2raq
Calcium binding site 10 out
of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca98
b:53.8
occ:1.00
|
OD1
|
E:ASP12
|
2.6
|
52.0
|
1.0
|
OG
|
E:SER78
|
2.9
|
57.2
|
1.0
|
CG
|
E:ASP12
|
3.6
|
51.0
|
1.0
|
CB
|
E:SER78
|
3.7
|
55.1
|
1.0
|
OD2
|
E:ASP12
|
3.9
|
50.9
|
1.0
|
OD1
|
E:ASP80
|
4.4
|
58.8
|
1.0
|
CB
|
E:HIS77
|
4.5
|
54.7
|
1.0
|
O
|
E:HIS77
|
4.6
|
53.9
|
1.0
|
N
|
E:SER78
|
4.6
|
54.0
|
1.0
|
C
|
E:HIS77
|
4.6
|
53.7
|
1.0
|
CA
|
E:SER78
|
4.7
|
54.4
|
1.0
|
CB
|
E:ASP12
|
4.9
|
49.8
|
1.0
|
|
Reference:
F.Forouhar,
M.Su,
X.Xu,
J.Seetharaman,
L.Mao,
R.Xiao,
L.-C.Ma,
K.Conover,
M.C.Baran,
T.B.Acton,
G.T.Montelione,
C.H.Arrowsmith,
J.F.Hunt,
L.Tong.
Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. To Be Published.
Page generated: Fri Jul 12 15:49:47 2024
|