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Calcium in PDB 2vfp: Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L

Protein crystallography data

The structure of Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L, PDB code: 2vfp was solved by M.Becker, J.J.Mueller, U.Heinemann, R.Seckler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.09 / 1.55
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 120.290, 120.290, 120.290, 90.00, 90.00, 90.00
R / Rfree (%) 12.3 / 15.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L (pdb code 2vfp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L, PDB code: 2vfp:

Calcium binding site 1 out of 1 in 2vfp

Go back to Calcium Binding Sites List in 2vfp
Calcium binding site 1 out of 1 in the Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Low Temperature Structure of P22 Tailspike Protein Fragment (109-666), Mutant V349L within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1674

b:9.7
occ:0.18
O A:LEU663 2.3 9.9 1.0
O A:HOH2758 2.4 20.1 1.0
C A:LEU663 3.2 11.1 1.0
CA A:LEU663 3.9 10.6 1.0
N A:ALA664 4.1 10.8 1.0
O A:THR662 4.2 9.9 1.0
CA A:ALA664 4.3 10.6 1.0
O A:HOH2760 4.7 33.3 1.0
CD1 A:LEU663 4.8 11.7 1.0
N A:LEU663 4.8 10.6 1.0
C A:THR662 4.9 9.9 1.0

Reference:

M.Becker, J.J.Mueller, T.Weikl, U.Heinemann, R.Seckler. Side-Chain Stacking and Beta-Helix Stability in P22 Tailspike Protein To Be Published.
Page generated: Tue Jul 8 08:38:05 2025

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