Calcium in PDB 2vmg: The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose

The structure of The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose, PDB code: 2vmg was solved by K.Gregg, R.Finn, D.W.Abbott, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	37.475, 47.948, 38.704, 90.00, 92.00, 90.00
R / Rfree (%)	23 / 29.6

The binding sites of Calcium atom in the The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose (pdb code 2vmg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose, PDB code: 2vmg:

Calcium binding site 1 out of 1 in the The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of CBM51 From Clostridium Perfringens GH95 in Complex with Methyl-Galactose within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1178 b:19.7 occ:1.00 O A:SER163 2.3 19.1 1.0 O A:HOH2138 2.3 16.7 1.0 OD1 A:ASP162 2.4 20.5 1.0 O A:ASP159 2.4 22.8 1.0 OD2 A:ASP167 2.5 15.1 1.0 OD1 A:ASP167 2.6 16.6 1.0 O A:SER116 2.7 18.3 1.0 OG A:SER116 2.7 18.0 1.0 CG A:ASP167 2.9 16.2 1.0 C A:ASP159 3.4 22.7 1.0 C A:SER163 3.5 19.8 1.0 CG A:ASP162 3.6 23.1 1.0 C A:SER116 3.7 17.7 1.0 N A:SER116 3.8 17.8 1.0 CB A:SER116 3.9 17.6 1.0 CA A:SER116 4.0 17.9 1.0 N A:SER163 4.0 21.3 1.0 OD2 A:ASP162 4.1 23.6 1.0 O A:HOH2136 4.1 25.2 1.0 CA A:ASP159 4.1 22.6 1.0 N A:GLY160 4.3 23.2 1.0 O A:GLY165 4.4 18.9 1.0 CB A:ASP159 4.4 22.4 1.0 CA A:SER163 4.4 20.3 1.0 N A:ILE164 4.4 19.1 1.0 CB A:ASP167 4.4 16.5 1.0 CA A:ILE164 4.5 18.7 1.0 CA A:GLY160 4.5 23.4 1.0 O A:VAL114 4.7 18.7 1.0 C A:ILE164 4.7 18.6 1.0 CB A:ASP162 4.8 22.4 1.0 N A:GLY165 4.8 18.6 1.0 N A:ASP162 4.8 23.1 1.0 N A:ILE117 4.9 17.8 1.0 C A:ALA115 4.9 18.1 1.0 C A:GLY160 5.0 23.7 1.0 C A:ASP162 5.0 22.1 1.0

K.Gregg, R.Finn, D.W.Abbott, A.B.Boraston. Divergent Modes of Glycan Recognition By A New Family of Carbohydrate-Binding Modules J.Biol.Chem. V. 283 12604 2008.
ISSN: ISSN 0021-9258
PubMed: 18292090
DOI: 10.1074/JBC.M709865200