Calcium in PDB 2vrg: Structure of Human MCFD2

The binding sites of Calcium atom in the Structure of Human MCFD2 (pdb code 2vrg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Human MCFD2, PDB code: 2vrg:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of Human MCFD2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human MCFD2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1147 b:0.0 occ:1.00 OD2 A:ASP83 1.8 0.0 1.0 OE2 A:GLU92 2.1 0.0 1.0 O A:LEU87 2.3 0.0 1.0 OD1 A:ASP83 2.3 0.0 1.0 CG A:ASP83 2.3 0.0 1.0 OD2 A:ASP81 2.4 0.0 1.0 OE1 A:GLU92 2.5 0.0 1.0 OD1 A:ASN85 2.5 0.0 1.0 CD A:GLU92 2.6 0.0 1.0 HA A:ASP81 3.3 0.0 1.0 HD22 A:LEU88 3.3 0.0 1.0 HA A:LEU88 3.4 0.0 1.0 H A:ASN85 3.5 0.0 1.0 C A:LEU87 3.5 0.0 1.0 CG A:ASN85 3.5 0.0 1.0 CG A:ASP81 3.5 0.0 1.0 H A:LEU87 3.6 0.0 1.0 HB2 A:ASP81 3.8 0.0 1.0 H A:ASP83 3.8 0.0 1.0 CB A:ASP83 3.8 0.0 1.0 HD22 A:ASN85 3.9 0.0 1.0 CB A:ASP81 4.0 0.0 1.0 CG A:GLU92 4.1 0.0 1.0 CA A:ASP81 4.1 0.0 1.0 ND2 A:ASN85 4.1 0.0 1.0 H A:GLY84 4.2 0.0 1.0 HB3 A:ASP83 4.2 0.0 1.0 H A:ASP89 4.3 0.0 1.0 HG2 A:GLU92 4.3 0.0 1.0 N A:LEU87 4.3 0.0 1.0 CA A:LEU88 4.3 0.0 1.0 N A:LEU88 4.4 0.0 1.0 N A:ASN85 4.4 0.0 1.0 HB2 A:ASP83 4.4 0.0 1.0 CD2 A:LEU88 4.4 0.0 1.0 CA A:LEU87 4.5 0.0 1.0 N A:ASP83 4.5 0.0 1.0 CB A:ASN85 4.6 0.0 1.0 HG3 A:GLU92 4.6 0.0 1.0 HB3 A:ASN85 4.6 0.0 1.0 H A:TYR82 4.6 0.0 1.0 OD1 A:ASP81 4.6 0.0 1.0 N A:GLY84 4.6 0.0 1.0 CA A:ASP83 4.6 0.0 1.0 H A:ASN86 4.7 0.0 1.0 HB2 A:LEU87 4.7 0.0 1.0 HD23 A:LEU88 4.8 0.0 1.0 C A:ASP81 4.8 0.0 1.0 C A:ASP83 4.9 0.0 1.0 HG A:LEU88 4.9 0.0 1.0 N A:TYR82 4.9 0.0 1.0 HB3 A:GLU92 4.9 0.0 1.0 CA A:ASN85 5.0 0.0 1.0 HD21 A:LEU88 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Structure of Human MCFD2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Human MCFD2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1148 b:0.0 occ:1.00 OD2 A:ASP133 1.9 0.0 1.0 OE2 A:GLU140 2.1 0.0 1.0 OE1 A:GLU140 2.2 0.0 1.0 OD1 A:ASP133 2.2 0.0 1.0 O A:TYR135 2.3 0.0 1.0 CG A:ASP133 2.3 0.0 1.0 OD2 A:ASP129 2.4 0.0 1.0 CD A:GLU140 2.4 0.0 1.0 OD1 A:ASN131 2.5 0.0 1.0 H A:TYR135 3.2 0.0 1.0 C A:TYR135 3.4 0.0 1.0 CG A:ASP129 3.5 0.0 1.0 H A:ASP133 3.6 0.0 1.0 HA A:ILE136 3.6 0.0 1.0 HA A:ASP129 3.6 0.0 1.0 H A:ASN131 3.6 0.0 1.0 HB2 A:ASP129 3.7 0.0 1.0 CG A:ASN131 3.7 0.0 1.0 H A:ASP137 3.8 0.0 1.0 HB2 A:ASN131 3.8 0.0 1.0 CB A:ASP133 3.8 0.0 1.0 HB2 A:TYR135 3.9 0.0 1.0 CG A:GLU140 3.9 0.0 1.0 N A:TYR135 3.9 0.0 1.0 CB A:ASP129 4.0 0.0 1.0 H A:GLY134 4.1 0.0 1.0 CA A:TYR135 4.2 0.0 1.0 CA A:ASP129 4.2 0.0 1.0 CB A:ASN131 4.3 0.0 1.0 N A:ILE136 4.3 0.0 1.0 HG3 A:GLU140 4.3 0.0 1.0 HG2 A:GLU140 4.3 0.0 1.0 H A:LYS130 4.3 0.0 1.0 HB2 A:ASP133 4.3 0.0 1.0 HD23 A:LEU87 4.3 0.0 1.0 N A:ASP133 4.4 0.0 1.0 HB3 A:ASP133 4.4 0.0 1.0 CA A:ILE136 4.4 0.0 1.0 HB3 A:ASP137 4.5 0.0 1.0 N A:ASP137 4.5 0.0 1.0 N A:ASN131 4.5 0.0 1.0 N A:GLY134 4.5 0.0 1.0 CA A:ASP133 4.5 0.0 1.0 OD1 A:ASP129 4.6 0.0 1.0 CB A:TYR135 4.6 0.0 1.0 HD22 A:LEU87 4.7 0.0 1.0 C A:ASP129 4.7 0.0 1.0 N A:LYS130 4.7 0.0 1.0 ND2 A:ASN131 4.8 0.0 1.0 HB2 A:ASP137 4.8 0.0 1.0 H A:ASN132 4.8 0.0 1.0 C A:ASP133 4.8 0.0 1.0 HD22 A:ASN131 4.9 0.0 1.0 HB3 A:GLU140 4.9 0.0 1.0 CA A:ASN131 4.9 0.0 1.0 CB A:GLU140 4.9 0.0 1.0 C A:ILE136 4.9 0.0 1.0 HD2 A:TYR135 4.9 0.0 1.0 HB2 A:GLU140 4.9 0.0 1.0

J.E.Guy, E.Wigren, M.Svard, T.Hard, Y.Lindqvist. New Insights Into Multiple Coagulation Factor Deficiency From the Solution Structure of Human MCFD2. J. Mol. Biol. V. 381 941 2008.
ISSN: ESSN 1089-8638
PubMed: 18590741
DOI: 10.1016/J.JMB.2008.06.042