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Calcium in PDB 2y83: Actin Filament Pointed End

Calcium Binding Sites:

The binding sites of Calcium atom in the Actin Filament Pointed End (pdb code 2y83). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Actin Filament Pointed End, PDB code: 2y83:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in 2y83

Go back to Calcium Binding Sites List in 2y83
Calcium binding site 1 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
O:Ca500

b:0.0
occ:1.00
O3B O:ADP400 2.1 0.0 1.0
O1B O:ADP400 2.1 0.0 1.0
OD1 O:ASP11 2.2 0.0 1.0
OD2 O:ASP11 2.3 0.0 1.0
OE1 O:GLN137 2.4 0.0 1.0
O O:ASN12 2.4 0.0 1.0
CG O:ASP11 2.6 0.0 1.0
PB O:ADP400 2.8 0.0 1.0
HZ1 O:LYS18 3.1 0.0 1.0
HA3 O:GLY13 3.5 0.0 1.0
HG22 O:THR106 3.5 0.0 1.0
CD O:GLN137 3.6 0.0 1.0
C O:ASN12 3.6 0.0 1.0
HZ2 O:LYS18 3.7 0.0 1.0
O2B O:ADP400 3.7 0.0 1.0
HA2 O:GLY13 3.9 0.0 1.0
NZ O:LYS18 3.9 0.0 1.0
HE22 O:GLN137 3.9 0.0 1.0
O3A O:ADP400 4.0 0.0 1.0
CA O:GLY13 4.0 0.0 1.0
CB O:ASP11 4.1 0.0 1.0
NE2 O:GLN137 4.2 0.0 1.0
H O:ASN12 4.3 0.0 1.0
N O:GLY13 4.4 0.0 1.0
HZ3 O:LYS18 4.4 0.0 1.0
N O:ASN12 4.5 0.0 1.0
CG2 O:THR106 4.5 0.0 1.0
HG23 O:THR106 4.6 0.0 1.0
HG2 O:GLN137 4.6 0.0 1.0
HB3 O:ASP11 4.6 0.0 1.0
HB2 O:ASP11 4.7 0.0 1.0
HB O:VAL339 4.7 0.0 1.0
CA O:ASN12 4.7 0.0 1.0
C O:ASP11 4.7 0.0 1.0
CG O:GLN137 4.8 0.0 1.0
HE2 O:LYS18 4.8 0.0 1.0
HA O:ASP11 4.8 0.0 1.0
HG21 O:THR106 4.8 0.0 1.0
CG2 O:VAL339 4.8 0.0 1.0
CA O:ASP11 4.9 0.0 1.0
PA O:ADP400 4.9 0.0 1.0
O1A O:ADP400 4.9 0.0 1.0
CG1 O:VAL339 4.9 0.0 1.0
CE O:LYS18 5.0 0.0 1.0

Calcium binding site 2 out of 6 in 2y83

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Calcium binding site 2 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Ca500

b:0.0
occ:1.00
O3B P:ADP400 2.1 0.0 1.0
O1B P:ADP400 2.1 0.0 1.0
OD1 P:ASP11 2.2 0.0 1.0
OD2 P:ASP11 2.3 0.0 1.0
OE1 P:GLN137 2.4 0.0 1.0
O P:ASN12 2.4 0.0 1.0
CG P:ASP11 2.6 0.0 1.0
PB P:ADP400 2.8 0.0 1.0
HZ1 P:LYS18 3.1 0.0 1.0
HZ2 P:LYS18 3.5 0.0 1.0
HG22 P:THR106 3.5 0.0 1.0
HA3 P:GLY13 3.5 0.0 1.0
CD P:GLN137 3.6 0.0 1.0
C P:ASN12 3.6 0.0 1.0
O2B P:ADP400 3.7 0.0 1.0
NZ P:LYS18 3.8 0.0 1.0
HE22 P:GLN137 3.9 0.0 1.0
O3A P:ADP400 4.0 0.0 1.0
HA2 P:GLY13 4.1 0.0 1.0
CB P:ASP11 4.1 0.0 1.0
CA P:GLY13 4.1 0.0 1.0
NE2 P:GLN137 4.2 0.0 1.0
N P:GLY13 4.4 0.0 1.0
HZ3 P:LYS18 4.4 0.0 1.0
CG2 P:THR106 4.5 0.0 1.0
HG2 P:GLN137 4.5 0.0 1.0
HG23 P:THR106 4.6 0.0 1.0
HB3 P:ASP11 4.6 0.0 1.0
HE2 P:LYS18 4.6 0.0 1.0
HB P:VAL339 4.6 0.0 1.0
N P:ASN12 4.6 0.0 1.0
C P:ASP11 4.6 0.0 1.0
HB2 P:ASP11 4.7 0.0 1.0
CG2 P:VAL339 4.7 0.0 1.0
CG P:GLN137 4.7 0.0 1.0
CA P:ASN12 4.8 0.0 1.0
H P:ASN12 4.8 0.0 1.0
CA P:ASP11 4.8 0.0 1.0
HG21 P:THR106 4.8 0.0 1.0
HA P:ASP11 4.9 0.0 1.0
CE P:LYS18 4.9 0.0 1.0
PA P:ADP400 4.9 0.0 1.0
CG1 P:VAL339 4.9 0.0 1.0
O P:ASP11 5.0 0.0 1.0
O1A P:ADP400 5.0 0.0 1.0

Calcium binding site 3 out of 6 in 2y83

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Calcium binding site 3 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Ca500

b:0.0
occ:1.00
O3B Q:ADP400 2.1 0.0 1.0
O1B Q:ADP400 2.1 0.0 1.0
OE1 Q:GLN137 2.1 0.0 1.0
O1A Q:ADP400 2.2 0.0 1.0
OD2 Q:ASP11 2.2 0.0 1.0
OD1 Q:ASP11 2.2 0.0 1.0
CG Q:ASP11 2.6 0.0 1.0
PB Q:ADP400 2.7 0.0 1.0
HZ2 Q:LYS18 3.2 0.0 1.0
PA Q:ADP400 3.2 0.0 1.0
CD Q:GLN137 3.3 0.0 1.0
O3A Q:ADP400 3.4 0.0 1.0
HE22 Q:GLN137 3.5 0.0 1.0
HG1 Q:THR106 3.6 0.0 1.0
HZ3 Q:LYS18 3.7 0.0 1.0
H Q:GLY13 3.7 0.0 1.0
HG23 Q:THR106 3.8 0.0 1.0
O2A Q:ADP400 3.9 0.0 1.0
NE2 Q:GLN137 3.9 0.0 1.0
NZ Q:LYS18 3.9 0.0 1.0
O2B Q:ADP400 4.1 0.0 1.0
CB Q:ASP11 4.1 0.0 1.0
HE2 Q:LYS18 4.1 0.0 1.0
HA3 Q:GLY156 4.3 0.0 1.0
HG3 Q:GLN137 4.4 0.0 1.0
OG1 Q:THR106 4.5 0.0 1.0
HA2 Q:GLY156 4.5 0.0 1.0
O5' Q:ADP400 4.5 0.0 1.0
CG Q:GLN137 4.5 0.0 1.0
HB3 Q:ASP11 4.5 0.0 1.0
H Q:ASP157 4.6 0.0 1.0
N Q:GLY13 4.6 0.0 1.0
HB2 Q:ASP11 4.6 0.0 1.0
CE Q:LYS18 4.7 0.0 1.0
C Q:ASP11 4.7 0.0 1.0
HA3 Q:GLY13 4.7 0.0 1.0
HZ1 Q:LYS18 4.7 0.0 1.0
N Q:ASN12 4.7 0.0 1.0
HE21 Q:GLN137 4.8 0.0 1.0
H Q:ASN12 4.8 0.0 1.0
CG1 Q:VAL339 4.8 0.0 1.0
HA Q:ASP11 4.8 0.0 1.0
CA Q:ASP11 4.8 0.0 1.0
CG2 Q:THR106 4.8 0.0 1.0
H Q:GLY302 4.9 0.0 1.0
CA Q:GLY156 4.9 0.0 1.0
O Q:ASP11 5.0 0.0 1.0
HB2 Q:GLN137 5.0 0.0 1.0

Calcium binding site 4 out of 6 in 2y83

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Calcium binding site 4 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Ca500

b:0.0
occ:1.00
O3B R:ADP400 2.1 0.0 1.0
O1B R:ADP400 2.1 0.0 1.0
OE1 R:GLN137 2.2 0.0 1.0
OD1 R:ASP11 2.2 0.0 1.0
OD2 R:ASP11 2.2 0.0 1.0
CG R:ASP11 2.6 0.0 1.0
PB R:ADP400 2.7 0.0 1.0
HZ2 R:LYS18 3.1 0.0 1.0
HG1 R:THR106 3.3 0.0 1.0
CD R:GLN137 3.3 0.0 1.0
HZ3 R:LYS18 3.8 0.0 1.0
O3A R:ADP400 3.8 0.0 1.0
O2B R:ADP400 3.8 0.0 1.0
HA2 R:GLY13 3.9 0.0 1.0
NZ R:LYS18 3.9 0.0 1.0
HE22 R:GLN137 3.9 0.0 1.0
NE2 R:GLN137 4.1 0.0 1.0
OG1 R:THR106 4.1 0.0 1.0
CB R:ASP11 4.1 0.0 1.0
HG23 R:THR106 4.1 0.0 1.0
HG3 R:GLN137 4.2 0.0 1.0
HA3 R:GLY13 4.3 0.0 1.0
CG R:GLN137 4.3 0.0 1.0
HE2 R:LYS18 4.4 0.0 1.0
HG2 R:GLN137 4.5 0.0 1.0
CA R:GLY13 4.5 0.0 1.0
O1A R:ADP400 4.5 0.0 1.0
HZ1 R:LYS18 4.5 0.0 1.0
HB3 R:ASP11 4.5 0.0 1.0
HB2 R:ASP11 4.6 0.0 1.0
HA3 R:GLY156 4.6 0.0 1.0
PA R:ADP400 4.6 0.0 1.0
CE R:LYS18 4.8 0.0 1.0
CG1 R:VAL339 4.8 0.0 1.0
HA R:ASP11 4.8 0.0 1.0
O R:ASP11 4.8 0.0 1.0
N R:GLY13 4.8 0.0 1.0
HB R:VAL339 4.9 0.0 1.0
CG2 R:THR106 4.9 0.0 1.0
CA R:ASP11 4.9 0.0 1.0
C R:ASP11 4.9 0.0 1.0
HE21 R:GLN137 4.9 0.0 1.0
CB R:THR106 5.0 0.0 1.0

Calcium binding site 5 out of 6 in 2y83

Go back to Calcium Binding Sites List in 2y83
Calcium binding site 5 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Ca500

b:0.0
occ:1.00
O3B S:ADP400 2.1 0.0 1.0
O1B S:ADP400 2.1 0.0 1.0
OE1 S:GLN137 2.2 0.0 1.0
O1A S:ADP400 2.2 0.0 1.0
OD2 S:ASP11 2.2 0.0 1.0
OD1 S:ASP11 2.2 0.0 1.0
CG S:ASP11 2.6 0.0 1.0
PB S:ADP400 2.7 0.0 1.0
PA S:ADP400 3.2 0.0 1.0
HZ2 S:LYS18 3.2 0.0 1.0
CD S:GLN137 3.4 0.0 1.0
O3A S:ADP400 3.4 0.0 1.0
H S:GLY13 3.7 0.0 1.0
HG1 S:THR106 3.7 0.0 1.0
HZ3 S:LYS18 3.8 0.0 1.0
HG23 S:THR106 3.8 0.0 1.0
O2A S:ADP400 3.8 0.0 1.0
HE22 S:GLN137 3.9 0.0 1.0
NZ S:LYS18 4.0 0.0 1.0
O2B S:ADP400 4.1 0.0 1.0
CB S:ASP11 4.1 0.0 1.0
NE2 S:GLN137 4.1 0.0 1.0
HA3 S:GLY156 4.3 0.0 1.0
HG3 S:GLN137 4.3 0.0 1.0
HE2 S:LYS18 4.3 0.0 1.0
HA2 S:GLY156 4.4 0.0 1.0
CG S:GLN137 4.5 0.0 1.0
N S:GLY13 4.5 0.0 1.0
O5' S:ADP400 4.5 0.0 1.0
HB3 S:ASP11 4.5 0.0 1.0
HA S:ASN12 4.6 0.0 1.0
C S:ASP11 4.6 0.0 1.0
OG1 S:THR106 4.6 0.0 1.0
HB2 S:ASP11 4.7 0.0 1.0
H S:ASP157 4.7 0.0 1.0
N S:ASN12 4.7 0.0 1.0
HA3 S:GLY13 4.7 0.0 1.0
HZ1 S:LYS18 4.7 0.0 1.0
CE S:LYS18 4.8 0.0 1.0
CG2 S:THR106 4.8 0.0 1.0
CA S:ASP11 4.8 0.0 1.0
CA S:GLY156 4.8 0.0 1.0
O S:ASP11 4.9 0.0 1.0
HA S:ASP11 4.9 0.0 1.0
H S:ASN12 4.9 0.0 1.0
HB2 S:GLN137 5.0 0.0 1.0
H S:GLY302 5.0 0.0 1.0

Calcium binding site 6 out of 6 in 2y83

Go back to Calcium Binding Sites List in 2y83
Calcium binding site 6 out of 6 in the Actin Filament Pointed End


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Actin Filament Pointed End within 5.0Å range:
probe atom residue distance (Å) B Occ
T:Ca500

b:0.0
occ:1.00
O1B T:ADP400 2.1 0.0 1.0
OD1 T:ASP11 2.1 0.0 1.0
O3B T:ADP400 2.1 0.0 1.0
O1A T:ADP400 2.2 0.0 1.0
OE1 T:GLN137 2.2 0.0 1.0
OD2 T:ASP11 2.2 0.0 1.0
CG T:ASP11 2.6 0.0 1.0
PB T:ADP400 2.7 0.0 1.0
HZ2 T:LYS18 3.2 0.0 1.0
PA T:ADP400 3.2 0.0 1.0
CD T:GLN137 3.4 0.0 1.0
O3A T:ADP400 3.4 0.0 1.0
HG23 T:THR106 3.5 0.0 1.0
HZ3 T:LYS18 3.6 0.0 1.0
HA3 T:GLY156 3.7 0.0 1.0
O2A T:ADP400 3.9 0.0 1.0
HG3 T:GLN137 3.9 0.0 1.0
NZ T:LYS18 3.9 0.0 1.0
O2B T:ADP400 4.0 0.0 1.0
CB T:ASP11 4.0 0.0 1.0
H T:ASP157 4.1 0.0 1.0
H T:GLY13 4.1 0.0 1.0
HA2 T:GLY156 4.2 0.0 1.0
HE22 T:GLN137 4.2 0.0 1.0
CG T:GLN137 4.3 0.0 1.0
NE2 T:GLN137 4.3 0.0 1.0
HG3 T:LYS336 4.4 0.0 1.0
CA T:GLY156 4.4 0.0 1.0
HA T:ASN12 4.4 0.0 1.0
C T:ASP11 4.4 0.0 1.0
HZ1 T:LYS18 4.5 0.0 1.0
O5' T:ADP400 4.5 0.0 1.0
HB3 T:ASP11 4.5 0.0 1.0
CG2 T:THR106 4.6 0.0 1.0
N T:ASN12 4.6 0.0 1.0
N T:GLY13 4.6 0.0 1.0
HA3 T:GLY13 4.6 0.0 1.0
HE2 T:LYS18 4.6 0.0 1.0
HB2 T:ASP11 4.6 0.0 1.0
O T:ASP11 4.7 0.0 1.0
CA T:ASP11 4.7 0.0 1.0
HA T:ASP11 4.7 0.0 1.0
HG2 T:GLN137 4.8 0.0 1.0
H T:GLY302 4.9 0.0 1.0
H T:ASN12 4.9 0.0 1.0
HG22 T:THR106 4.9 0.0 1.0
N T:ASP157 4.9 0.0 1.0
CE T:LYS18 4.9 0.0 1.0
HB3 T:ALA108 5.0 0.0 1.0
CA T:ASN12 5.0 0.0 1.0

Reference:

A.Narita, T.Oda, Y.Maeda. Structural Basis For the Slow Dynamics of the Actin Filament Pointed End. Embo J. V. 30 1230 2011.
ISSN: ISSN 0261-4189
PubMed: 21378753
DOI: 10.1038/EMBOJ.2011.48
Page generated: Tue Jul 8 09:36:27 2025

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