Atomistry » Calcium » PDB 3aau-3ati » 3ams
Atomistry »
  Calcium »
    PDB 3aau-3ati »
      3ams »

Calcium in PDB 3ams: Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate

Enzymatic activity of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate

All present enzymatic activity of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate:
3.1.3.8;

Protein crystallography data

The structure of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate, PDB code: 3ams was solved by Y.F.Zeng, T.P.Ko, H.L.Lai, Y.S.Cheng, T.H.Wu, Y.Ma, C.S.Yang, K.J.Cheng, C.H.Huang, R.T.Guo, J.R.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.08
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.897, 73.544, 52.533, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 21.9

Other elements in 3ams:

The structure of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate also contains other interesting chemical elements:

Cadmium (Cd) 7 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate (pdb code 3ams). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate, PDB code: 3ams:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 3ams

Go back to Calcium Binding Sites List in 3ams
Calcium binding site 1 out of 4 in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca901

b:24.1
occ:1.00
 OD1 A:ASP313 2.2 24.9 1.0
O A:ILE312 2.4 27.2 1.0
OD1 A:ASP280 2.4 24.7 1.0
O A:HOH401 2.4 28.3 1.0
OD1 A:ASN311 2.5 27.0 1.0
OE1 A:GLU15 2.5 30.3 1.0
OE2 A:GLU15 2.7 32.4 1.0
CD A:GLU15 2.9 32.5 1.0
CG A:ASP280 3.3 26.3 1.0
C A:ILE312 3.3 26.9 1.0
CG A:ASP313 3.4 29.2 1.0
CG A:ASN311 3.6 28.6 1.0
NZ A:LYS323 3.8 25.0 1.0
OD2 A:ASP280 3.8 24.4 1.0
CA A:ASP313 4.0 28.9 1.0
N A:ASP313 4.0 26.7 1.0
N A:ILE312 4.0 25.7 1.0
ND2 A:ASN311 4.0 25.5 1.0
CB A:ASP313 4.3 27.8 1.0
CB A:ASP280 4.3 24.7 1.0
OD2 A:ASP313 4.3 30.3 1.0
N A:ASP280 4.3 23.5 1.0
CA A:ILE312 4.4 25.8 1.0
CE A:LYS323 4.4 22.1 1.0
ND2 A:ASN321 4.4 24.1 1.0
CG A:GLU15 4.5 29.5 1.0
O A:HOH564 4.6 50.9 1.0
O A:HOH568 4.6 43.9 1.0
C A:ASN311 4.8 27.0 1.0
CB A:ASN311 4.9 27.3 1.0
CA A:ASP280 5.0 25.0 1.0
CB A:THR279 5.0 28.1 1.0

Calcium binding site 2 out of 4 in 3ams

Go back to Calcium Binding Sites List in 3ams
Calcium binding site 2 out of 4 in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca902

b:20.8
occ:1.00
 O A:GLY281 2.3 24.1 1.0
O A:GLU310 2.4 25.6 1.0
OD2 A:ASP280 2.4 24.4 1.0
OD2 A:ASP308 2.4 22.5 1.0
O A:HOH402 2.6 30.1 1.0
O A:HOH445 2.7 32.2 1.0
OD1 A:ASP308 3.1 22.3 1.0
CG A:ASP308 3.1 24.2 1.0
C A:GLU310 3.4 27.3 1.0
C A:GLY281 3.4 25.2 1.0
CG A:ASP280 3.5 26.3 1.0
CA A:THR282 4.0 24.1 1.0
CA A:ASN311 4.0 27.7 1.0
CB A:ASP280 4.1 24.7 1.0
N A:ASN311 4.1 26.8 1.0
N A:THR282 4.1 25.9 1.0
NZ A:LYS323 4.2 25.0 1.0
O A:HOH446 4.3 64.3 1.0
N A:ILE312 4.3 25.7 1.0
N A:GLY281 4.4 27.1 1.0
OD1 A:ASP280 4.4 24.7 1.0
CA A:GLU310 4.5 29.0 1.0
C A:THR282 4.5 25.8 1.0
CB A:GLU310 4.5 31.7 1.0
CA A:GLY281 4.5 26.3 1.0
C A:ASP280 4.5 25.8 1.0
CB A:ASP308 4.6 22.7 1.0
C A:ASN311 4.6 27.0 1.0
CE A:LYS323 4.7 22.1 1.0
N A:SER283 4.7 26.1 1.0
O A:HOH447 4.7 41.2 1.0
OG A:SER283 4.7 31.2 1.0
CG1 A:ILE312 4.8 27.4 1.0
N A:GLU310 4.8 28.5 1.0
O A:ASP280 4.9 25.2 1.0

Calcium binding site 3 out of 4 in 3ams

Go back to Calcium Binding Sites List in 3ams
Calcium binding site 3 out of 4 in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca903

b:29.6
occ:1.00
 O A:HOH409 2.2 25.2 1.0
O A:HOH488 2.4 30.4 1.0
O A:HOH410 2.4 25.8 1.0
O A:PRO29 2.4 22.8 1.0
OD2 A:ASP28 2.4 25.1 1.0
O A:VAL73 2.5 20.5 1.0
OD1 A:ASP28 2.7 27.6 1.0
CG A:ASP28 2.9 26.1 1.0
C A:PRO29 3.6 23.5 1.0
C A:VAL73 3.7 23.0 1.0
O A:HOH548 4.2 29.1 1.0
N A:PRO29 4.3 22.1 1.0
N A:VAL73 4.3 24.3 1.0
CB A:ASP28 4.4 23.8 1.0
CG1 A:VAL73 4.4 21.0 1.0
N A:ALA30 4.4 22.8 1.0
CA A:ASP74 4.5 24.6 1.0
O A:HOH490 4.5 35.9 1.0
CA A:ALA30 4.5 22.2 1.0
CB A:ALA30 4.5 22.6 1.0
N A:ASP74 4.5 22.5 1.0
OD1 A:ASP289 4.5 31.9 1.0
O A:HOH489 4.6 40.6 1.0
CA A:PRO29 4.6 22.8 1.0
CA A:VAL73 4.6 22.3 1.0
CD A:PRO29 4.7 21.7 1.0
OD1 A:ASP74 4.7 32.0 1.0
C A:ASP28 4.7 23.7 1.0
O A:ILE288 4.7 23.4 1.0
CB A:ASP74 4.8 27.0 1.0
CG A:ASP289 4.9 28.9 1.0

Calcium binding site 4 out of 4 in 3ams

Go back to Calcium Binding Sites List in 3ams
Calcium binding site 4 out of 4 in the Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structures of Bacillus Subtilis Alkaline Phytase in Complex with CA2+, CD2+, CO2+, NI2+, MG2+ and Myo-Inositol Hexasulfate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca910

b:32.0
occ:1.00
 O A:HOH522 1.9 25.8 1.0
NE2 A:HIS121 2.0 38.3 1.0
O A:HOH524 2.1 33.8 1.0
O A:HOH523 2.5 45.5 1.0
CD2 A:HIS121 3.0 38.9 1.0
O A:HOH702 3.1 66.4 1.0
CE1 A:HIS121 3.1 39.5 1.0
CG A:HIS121 4.1 36.6 1.0
ND1 A:HIS121 4.2 38.7 1.0
OD2 A:ASP118 4.3 35.5 1.0

Reference:

Y.F.Zeng, T.P.Ko, H.L.Lai, Y.S.Cheng, T.H.Wu, Y.Ma, C.C.Chen, C.S.Yang, K.J.Cheng, C.H.Huang, R.T.Guo, J.R.Liu. Crystal Structures of Bacillus Alkaline Phytase in Complex with Divalent Metal Ions and Inositol Hexasulfate J.Mol.Biol. V. 409 214 2011.
ISSN: ISSN 0022-2836
PubMed: 21463636
DOI: 10.1016/J.JMB.2011.03.063
Page generated: Tue Jul 8 10:52:56 2025

Last articles

Na in 7A6Q
Na in 7A74
Na in 7A70
Na in 7A56
Na in 7A3K
Na in 7A68
Na in 7A3I
Na in 7A5Z
Na in 7A2N
Na in 7A2K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy