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Calcium in PDB 3bwx: Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution

Protein crystallography data

The structure of Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution, PDB code: 3bwx was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.71 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.480, 69.950, 82.220, 90.00, 90.00, 90.00
R / Rfree (%) 16.1 / 20.3

Other elements in 3bwx:

The structure of Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution (pdb code 3bwx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution, PDB code: 3bwx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3bwx

Go back to Calcium Binding Sites List in 3bwx
Calcium binding site 1 out of 2 in the Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca285

b:13.0
occ:1.00
O A:HOH349 2.3 12.3 1.0
O A:ALA207 2.4 12.5 1.0
O A:HOH352 2.4 12.6 1.0
O A:HOH424 2.4 13.1 1.0
O A:HOH363 2.4 11.5 1.0
O A:PRO204 2.5 10.0 1.0
O A:HOH357 2.6 13.1 1.0
C A:PRO204 3.5 10.7 1.0
C A:ALA207 3.6 11.3 1.0
N A:ALA207 4.0 13.5 1.0
CA A:PRO204 4.0 8.6 1.0
CA A:ALA207 4.2 14.1 1.0
C A:PRO208 4.2 15.4 1.0
O A:GLU203 4.3 10.0 1.0
O A:PRO208 4.3 14.6 1.0
O A:HOH400 4.4 18.2 1.0
O A:HOH326 4.4 10.1 1.0
N A:VAL209 4.4 12.8 1.0
O A:HOH336 4.4 12.1 1.0
CB A:ALA207 4.6 13.6 1.0
N A:PRO208 4.6 12.9 1.0
O A:HOH480 4.6 23.7 1.0
CA A:VAL209 4.6 11.3 1.0
O A:HOH317 4.6 13.5 1.0
O A:TYR77 4.6 9.4 1.0
N A:PHE205 4.6 9.5 1.0
CA A:PRO208 4.8 14.2 1.0
N A:GLU206 4.8 12.9 1.0
O A:HOH398 4.8 16.6 1.0
CB A:PRO204 5.0 9.9 1.0
CB A:PHE205 5.0 11.5 1.0

Calcium binding site 2 out of 2 in 3bwx

Go back to Calcium Binding Sites List in 3bwx
Calcium binding site 2 out of 2 in the Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Alpha/Beta Hydrolase (YP_496220.1) From Novosphingobium Aromaticivorans Dsm 12444 at 1.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca286

b:19.9
occ:1.00
O A:HOH525 2.3 24.8 1.0
O A:HOH505 2.4 24.3 1.0
O A:HOH446 2.5 27.8 1.0
OE1 A:GLU282 3.5 35.7 1.0
OE2 A:GLU282 4.0 45.6 1.0
CD A:GLU282 4.2 35.7 1.0
O A:HOH605 4.6 41.8 1.0
O A:HOH626 4.8 38.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 11:14:14 2025

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