Atomistry » Calcium » PDB 3dsx-3ead » 3dwe
Atomistry »
  Calcium »
    PDB 3dsx-3ead »
      3dwe »

Calcium in PDB 3dwe: Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline

Enzymatic activity of Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline

All present enzymatic activity of Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dwe was solved by E.Pechkova, S.K.Tripathi, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.06 / 0.99
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.948, 67.948, 102.388, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 22.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline (pdb code 3dwe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline, PDB code: 3dwe:

Calcium binding site 1 out of 1 in 3dwe

Go back to Calcium Binding Sites List in 3dwe
Calcium binding site 1 out of 1 in the Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Classical Hanging Drop Method After High X- Ray Dose on Esrf ID14-2 Beamline within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca280

b:0.4
occ:1.00
 O X:HOH390 2.4 17.2 1.0
O X:HOH410 2.4 14.0 1.0
O X:PRO175 2.8 6.6 1.0
OD1 X:ASP200 3.0 7.9 1.0
O X:HOH337 3.7 78.0 1.0
O X:HOH399 3.8 21.4 1.0
CG X:ASP200 3.9 5.7 1.0
C X:PRO175 4.0 5.9 1.0
OD2 X:ASP200 4.2 5.5 1.0
O X:VAL177 4.3 5.3 1.0
O X:HOH300 4.6 2.0 1.0
O X:HOH415 4.7 46.1 1.0
O X:HOH389 4.7 14.7 1.0
CA X:PRO175 4.8 6.3 1.0
N X:SER176 4.9 5.5 1.0
CA X:SER176 4.9 5.5 1.0
O X:HOH382 5.0 16.0 1.0

Reference:

E.Pechkova, S.K.Tripathi, C.Nicolini. Radiation Damage in Protein Structural Characterization By Synchrotron Radiation: State of the Art and Nanotechnology-Based Perspective To Be Published.
Page generated: Tue Jul 8 11:45:27 2025

Last articles

Mg in 6EDW
Mg in 6EE3
Mg in 6EE1
Mg in 6EAC
Mg in 6ED2
Mg in 6EDT
Mg in 6EAB
Mg in 6EA2
Mg in 6EA1
Mg in 6EAA
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy