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Calcium in PDB 3fce: Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism

Enzymatic activity of Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism

All present enzymatic activity of Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism:
6.1.1.13;

Protein crystallography data

The structure of Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism, PDB code: 3fce was solved by K.T.Osman, L.Du, Y.He, Y.Luo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.400, 87.400, 57.400, 90.00, 114.00, 90.00
R / Rfree (%) 20.7 / 25.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism (pdb code 3fce). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism, PDB code: 3fce:

Calcium binding site 1 out of 1 in 3fce

Go back to Calcium Binding Sites List in 3fce
Calcium binding site 1 out of 1 in the Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase Dlta in Complex with Atp: Implications For Adenylation Mechanism within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca710

b:33.1
occ:1.00
 O A:HOH793 2.3 29.0 1.0
O A:HOH791 2.4 29.1 1.0
O2B A:ATP711 2.4 32.1 1.0
O A:HOH794 2.4 17.2 1.0
O A:HOH792 2.5 20.3 1.0
O1G A:ATP711 2.6 38.1 1.0
PB A:ATP711 3.5 32.6 1.0
O A:HOH933 3.7 24.2 1.0
PG A:ATP711 3.8 40.8 1.0
O3A A:ATP711 3.9 30.4 1.0
O3B A:ATP711 4.1 35.5 1.0
OG1 A:THR152 4.2 46.5 1.0
O2A A:ATP711 4.4 23.3 1.0
NH1 A:ARG397 4.4 11.5 1.0
O3G A:ATP711 4.6 40.4 1.0
PA A:ATP711 4.7 24.8 1.0
OE1 A:GLU298 4.7 13.7 1.0
OE2 A:GLU298 4.7 15.1 1.0
O1B A:ATP711 4.8 32.6 1.0
O A:HOH823 4.8 13.4 1.0
O A:HOH1042 4.8 30.6 1.0
O2G A:ATP711 4.8 41.2 1.0
O3' A:ATP711 4.9 12.8 1.0
C5' A:ATP711 4.9 17.1 1.0

Reference:

K.T.Osman, L.Du, Y.He, Y.Luo. Crystal Structure of Bacillus Cereus D-Alanyl Carrier Protein Ligase (Dlta) in Complex with Atp. J.Mol.Biol. V. 388 345 2009.
ISSN: ISSN 0022-2836
PubMed: 19324056
DOI: 10.1016/J.JMB.2009.03.040
Page generated: Tue Jul 8 12:07:34 2025

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