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Calcium in PDB 3gv4: Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg

Enzymatic activity of Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg

All present enzymatic activity of Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg:
3.5.1.98;

Protein crystallography data

The structure of Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg, PDB code: 3gv4 was solved by A.Dong, M.Ravichandran, P.Loppnau, Y.Li, F.Mackenzie, I.Kozieradzki, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, C.Bountra, A.Bochkarev, S.Dhe-Paganon, J.Min, H.Ouyang, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.45 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 31.657, 36.093, 88.998, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 23

Other elements in 3gv4:

The structure of Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg (pdb code 3gv4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg, PDB code: 3gv4:

Calcium binding site 1 out of 1 in 3gv4

Go back to Calcium Binding Sites List in 3gv4
Calcium binding site 1 out of 1 in the Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C- Terminal Peptide Rlrgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca300

b:21.1
occ:1.00
 O A:ALA17 2.4 20.2 1.0
O A:HOH225 2.4 24.0 1.0
O A:HOH228 2.5 24.5 1.0
O A:HOH282 2.5 30.2 1.0
O A:HOH212 2.5 23.1 1.0
O A:HOH205 2.5 24.1 1.0
C A:ALA17 3.6 19.7 1.0
O A:HOH275 3.7 38.5 1.0
O A:HOH260 4.4 41.5 1.0
CA A:ALA17 4.5 19.6 1.0
N A:GLY18 4.5 20.0 1.0
CA A:GLY18 4.5 20.1 1.0
C A:GLY18 4.5 19.9 1.0
CB A:ALA17 4.6 19.1 1.0
O A:LEU19 4.6 19.4 1.0
O A:GLY18 4.8 20.3 1.0
O A:HOH232 4.8 22.6 1.0
O A:HOH292 4.8 26.2 1.0
N A:LEU19 4.8 19.9 1.0

Reference:

A.Dong, M.Ravichandran, P.Loppnau, Y.Li, F.Mackenzie, I.Kozieradzki, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, C.Bountra, A.Bochkarev, S.Dhe-Paganon, J.Min, H.Ouyang. Crystal Structure of Human HDAC6 Zinc Finger Domain and Ubiquitin C-Terminal Peptide Rlrgg To Be Published.
Page generated: Tue Jul 8 12:49:44 2025

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