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Calcium in PDB 3hly: Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D.

Protein crystallography data

The structure of Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D., PDB code: 3hly was solved by S.Vorobiev, M.Su, D.Lee, C.Ciccosanti, S.Sahdev, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomicsconsortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.94 / 2.40
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 76.270, 97.899, 118.076, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D. (pdb code 3hly). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D., PDB code: 3hly:

Calcium binding site 1 out of 1 in 3hly

Go back to Calcium Binding Sites List in 3hly
Calcium binding site 1 out of 1 in the Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp Q5MZP6_SYNP6 Protein. Northeast Structural Genomics Consortium Target SNR135D. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:51.0
occ:1.00
O B:HOH684 2.7 47.7 1.0
OD1 B:ASP397 2.7 54.6 1.0
O B:HOH674 2.8 46.2 1.0
OE1 B:GLU393 3.0 81.4 1.0
OD2 B:ASP397 3.3 52.8 1.0
CG B:ASP397 3.4 48.8 1.0
CD B:GLU393 4.1 77.9 1.0
O B:GLU393 4.6 39.7 1.0
O B:HOH713 4.7 43.8 1.0
CG B:GLU393 4.7 72.5 1.0
CB B:GLU393 4.7 57.4 1.0
CB B:ASP397 4.8 32.8 1.0

Reference:

S.Vorobiev, M.Su, D.Lee, C.Ciccosanti, S.Sahdev, R.Xiao, T.B.Acton, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the Flavodoxin-Like Domain From Synechococcus Sp. Q5MZP6_SYNP6 Protein. To Be Published.
Page generated: Tue Jul 8 13:02:14 2025

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