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Calcium in PDB 3i34: Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf

Enzymatic activity of Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf

All present enzymatic activity of Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf:
3.4.21.64;

Protein crystallography data

The structure of Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf, PDB code: 3i34 was solved by E.Pechkova, S.K.Tripathi, R.Ravelli, S.Mcsweeney, C.Nicolini, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.99 / 1.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.865, 67.865, 102.335, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 22

Other elements in 3i34:

The structure of Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf also contains other interesting chemical elements:

Mercury (Hg) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf (pdb code 3i34). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf, PDB code: 3i34:

Calcium binding site 1 out of 1 in 3i34

Go back to Calcium Binding Sites List in 3i34
Calcium binding site 1 out of 1 in the Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Proteinase K By Lb Nanotemplate Method After High X-Ray Dose on ID14-2 Beamline at Esrf within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Ca281

b:46.5
occ:1.00
 O X:HOH518 2.4 20.3 1.0
O X:VAL177 3.2 5.5 1.0
O X:PRO175 3.4 6.6 1.0
OD1 X:ASP200 3.6 6.7 1.0
C X:VAL177 3.7 4.7 1.0
O X:HOH510 3.8 11.1 1.0
O X:HOH368 3.8 13.0 1.0
SG X:CYS249 3.8 5.7 1.0
O X:SER176 3.8 5.9 1.0
C X:SER176 3.9 5.1 1.0
CG X:ASP200 4.1 5.2 1.0
CB X:CYS249 4.1 5.6 1.0
N X:VAL177 4.1 5.2 1.0
OD2 X:ASP200 4.2 5.6 1.0
N X:CYS178 4.3 4.6 1.0
CA X:VAL177 4.3 5.0 1.0
CA X:SER176 4.4 5.5 1.0
CA X:CYS178 4.5 4.6 1.0
C X:PRO175 4.5 5.6 1.0
O X:HOH433 4.6 10.8 1.0
O X:HOH370 4.7 40.7 1.0
O X:HOH311 4.9 2.0 1.0
N X:SER176 4.9 5.5 1.0

Reference:

E.Pechkova, S.K.Tripathi, R.Ravelli, S.Mcsweeney, C.Nicolini. Radiation Damage Study of Proteinase K at ID14-2 Beamline at Esrf To Be Published.
Page generated: Tue Jul 8 13:11:40 2025

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