Calcium in PDB 3kez: Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution

The structure of Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution, PDB code: 3kez was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.75 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.498, 91.088, 117.861, 90.00, 90.00, 90.00
R / Rfree (%)	15.2 / 20.4

The binding sites of Calcium atom in the Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution (pdb code 3kez). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution, PDB code: 3kez:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:31.5 occ:1.00 O A:ASP350 2.4 12.6 1.0 O A:ASN282 2.4 16.4 1.0 OE1 A:GLU346 2.5 15.7 1.0 OD1 A:ASN352 2.5 12.2 1.0 O A:HOH529 2.6 14.4 1.0 OE1 A:GLN343 2.6 20.6 1.0 OE2 A:GLU346 2.7 17.1 1.0 CD A:GLU346 3.0 15.4 1.0 CG A:ASN352 3.4 14.6 1.0 C A:ASP350 3.5 10.8 1.0 C A:ASN282 3.6 15.9 1.0 CD A:GLN343 3.7 22.4 1.0 N A:ASN352 3.7 12.0 1.0 ND2 A:ASN352 4.0 11.5 1.0 C A:ALA351 4.1 10.4 1.0 CA A:ALA351 4.2 9.8 1.0 N A:ASN282 4.2 10.4 1.0 N A:ALA351 4.3 10.3 1.0 CA A:ASN282 4.3 13.6 1.0 CG A:GLN343 4.4 13.4 1.0 CB A:GLN343 4.4 16.2 1.0 CB A:ASN282 4.4 12.0 1.0 CB A:ASN352 4.4 10.9 1.0 CA A:ASN352 4.4 10.4 1.0 CG A:GLU346 4.5 13.1 1.0 CB A:ASP350 4.5 11.8 1.0 CA A:ASP350 4.6 9.7 1.0 N A:LEU283 4.6 22.1 1.0 N A:GLN343 4.6 12.1 1.0 O A:HOH629 4.7 16.9 1.0 NE2 A:GLN343 4.8 22.9 1.0 CA A:LEU283 4.8 23.6 1.0 O A:ALA351 4.8 9.7 1.0 CD2 A:LEU283 4.9 17.2 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Sugar Binding Protein (YP_001299726.1) From Bacteroides Vulgatus Atcc 8482 at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca501 b:20.3 occ:1.00 OE1 B:GLU346 2.3 12.4 1.0 O B:ASP350 2.4 11.5 1.0 O B:HOH520 2.4 5.2 1.0 O B:ASN282 2.4 12.5 1.0 OE1 B:GLN343 2.5 8.6 1.0 OD1 B:ASN352 2.5 10.2 1.0 OE2 B:GLU346 2.8 20.3 1.0 CD B:GLU346 2.9 8.8 1.0 CG B:ASN352 3.4 11.8 1.0 CD B:GLN343 3.5 11.8 1.0 C B:ASP350 3.6 12.0 1.0 C B:ASN282 3.6 10.1 1.0 N B:ASN352 3.6 9.0 1.0 CG B:GLN343 4.0 9.8 1.0 C B:ALA351 4.0 9.6 1.0 ND2 B:ASN352 4.0 7.3 1.0 CB B:GLN343 4.1 8.8 1.0 CA B:ALA351 4.2 9.4 1.0 N B:ASN282 4.2 11.8 1.0 CA B:ASN282 4.3 10.2 1.0 N B:ALA351 4.3 9.4 1.0 CB B:ASN282 4.3 11.2 1.0 CB B:ASN352 4.3 9.6 1.0 CA B:ASN352 4.4 10.0 1.0 CG B:GLU346 4.4 10.5 1.0 N B:GLN343 4.5 9.0 1.0 O B:HOH715 4.5 28.1 1.0 CB B:ASP350 4.5 9.5 1.0 N B:LEU283 4.6 12.3 1.0 CA B:ASP350 4.7 11.0 1.0 NE2 B:GLN343 4.7 7.8 1.0 O B:ALA351 4.7 8.5 1.0 O B:HOH886 4.8 10.7 1.0 CA B:LEU283 4.9 14.1 1.0 CD2 B:LEU283 4.9 14.4 1.0 CA B:GLN343 4.9 9.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.