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Calcium in PDB 3kh1: Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution

Protein crystallography data

The structure of Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution, PDB code: 3kh1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.96 / 1.37
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.852, 83.906, 71.278, 90.00, 116.89, 90.00
R / Rfree (%) 13.2 / 16.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution (pdb code 3kh1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution, PDB code: 3kh1:

Calcium binding site 1 out of 1 in 3kh1

Go back to Calcium Binding Sites List in 3kh1
Calcium binding site 1 out of 1 in the Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Predicted Metal-Dependent Phosphohydrolase (ZP_00055740.2) From Magnetospirillum Magnetotacticum Ms-1 at 1.37 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca200

b:14.2
occ:0.50
OG1 A:THR29 3.1 13.8 1.0
O A:HOH277 3.1 16.5 1.0
O A:HOH358 3.1 24.6 1.0
O A:HOH294 3.3 18.1 1.0
O A:HOH228 3.5 20.4 1.0
CG2 A:THR155 3.6 12.6 1.0
CB A:PRO144 3.8 11.3 1.0
O A:HOH434 3.8 22.1 1.0
CA A:THR29 3.9 9.8 1.0
ND2 A:ASN148 3.9 12.9 1.0
CB A:THR155 3.9 10.7 1.0
CB A:THR29 3.9 10.9 1.0
N A:THR29 4.0 9.6 1.0
CE1 A:PHE85 4.1 17.1 1.0
OG1 A:THR155 4.2 10.8 1.0
CG2 A:THR29 4.5 12.3 1.0
C A:GLN28 4.6 9.6 1.0
O A:HOH380 4.6 21.0 1.0
O A:PRO144 4.6 11.1 1.0
CA A:PRO144 4.7 10.0 1.0
CG A:PRO144 4.8 14.8 1.0
CG A:ASN148 4.9 10.5 1.0
CZ A:PHE85 4.9 16.2 1.0
CD1 A:PHE85 4.9 17.2 1.0
O A:GLN28 5.0 10.6 1.0
C A:PRO144 5.0 9.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 13:49:03 2025

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