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Calcium in PDB 3l30: Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine

Enzymatic activity of Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine

All present enzymatic activity of Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine:
3.1.1.4;

Protein crystallography data

The structure of Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine, PDB code: 3l30 was solved by C.Naveen, G.K.Prasanth, J.Abhilash, M.Pradeep, K.Ponnuraj, C.Sadasivan, M.Haridas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.58 / 2.40
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.880, 68.880, 70.160, 90.00, 90.00, 120.00
R / Rfree (%) 16.3 / 24

Other elements in 3l30:

The structure of Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine (pdb code 3l30). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine, PDB code: 3l30:

Calcium binding site 1 out of 1 in 3l30

Go back to Calcium Binding Sites List in 3l30
Calcium binding site 1 out of 1 in the Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca125

b:24.4
occ:1.00
 O A:TYR28 2.2 15.6 1.0
O A:HOH208 2.3 22.4 1.0
O A:GLY30 2.3 22.2 1.0
OD2 A:ASP49 2.4 21.3 1.0
OD1 A:ASP49 2.4 17.4 1.0
O A:GLY32 2.5 19.3 1.0
O A:HOH215 2.6 22.9 1.0
CG A:ASP49 2.8 19.6 1.0
C A:TYR28 3.4 15.7 1.0
C A:GLY30 3.5 22.8 1.0
C A:GLY32 3.6 20.7 1.0
N A:GLY30 3.9 20.4 1.0
N A:GLY32 4.0 22.3 1.0
CA A:TYR28 4.2 14.7 1.0
CA A:GLY32 4.2 21.5 1.0
O A:HOH145 4.2 19.8 1.0
C18 A:DBW128 4.2 0.7 0.8
C14 A:DBW128 4.3 0.9 0.8
CB A:ASP49 4.3 17.3 1.0
C A:LEU31 4.3 23.0 1.0
CA A:GLY30 4.3 21.8 1.0
N A:CYS29 4.4 15.8 1.0
O A:HOH165 4.4 36.4 1.0
O A:HOH189 4.5 31.1 1.0
O A:HOH131 4.5 15.9 1.0
O A:HOH151 4.5 17.8 1.0
N A:LEU31 4.5 23.5 1.0
CA A:CYS29 4.6 18.5 1.0
C A:CYS29 4.6 19.9 1.0
CB A:TYR28 4.7 13.2 1.0
N A:GLY33 4.7 19.2 1.0
CA A:LEU31 4.7 23.8 1.0
O A:LEU31 4.8 23.9 1.0
O A:CYS45 4.8 18.7 1.0
CD1 A:TYR28 4.9 14.1 1.0

Reference:

C.Naveen, G.K.Prasanth, J.Abhilash, M.Pradeep, K.Ponnuraj, C.Sadasivan, M.Haridas. Crystal Structure of Porcine Pancreatic Phospholipase A2 Complexed with Dihydroxyberberine To Be Published.
Page generated: Tue Jul 8 14:04:44 2025

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