Atomistry » Calcium » PDB 3l7f-3ljt » 3le0
Atomistry »
  Calcium »
    PDB 3l7f-3ljt »
      3le0 »

Calcium in PDB 3le0: Lectin Domain of Lectinolysin Complexed with Glycerol

Protein crystallography data

The structure of Lectin Domain of Lectinolysin Complexed with Glycerol, PDB code: 3le0 was solved by S.C.Feil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.46 / 1.91
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.189, 67.189, 98.322, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.6

Other elements in 3le0:

The structure of Lectin Domain of Lectinolysin Complexed with Glycerol also contains other interesting chemical elements:

Nickel (Ni) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Lectin Domain of Lectinolysin Complexed with Glycerol (pdb code 3le0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Lectin Domain of Lectinolysin Complexed with Glycerol, PDB code: 3le0:

Calcium binding site 1 out of 1 in 3le0

Go back to Calcium Binding Sites List in 3le0
Calcium binding site 1 out of 1 in the Lectin Domain of Lectinolysin Complexed with Glycerol


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Lectin Domain of Lectinolysin Complexed with Glycerol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1

b:19.5
occ:1.00
O A:ARG68 2.3 17.5 1.0
O A:ALA176 2.3 17.4 1.0
O A:ASN73 2.4 19.3 1.0
OG A:SER82 2.4 20.4 1.0
OD1 A:ASP71 2.4 20.2 1.0
OE1 A:GLU177 2.5 19.8 1.0
O A:SER82 2.6 19.1 1.0
CG A:ASP71 3.4 21.0 1.0
CB A:SER82 3.5 20.5 1.0
C A:ASN73 3.5 20.1 1.0
C A:ARG68 3.5 18.1 1.0
C A:ALA176 3.5 17.7 1.0
C A:SER82 3.6 18.9 1.0
OD2 A:ASP71 3.6 20.5 1.0
CD A:GLU177 3.7 19.4 1.0
CA A:SER82 4.0 19.9 1.0
N A:ASN73 4.1 20.6 1.0
CA A:ASN73 4.1 20.4 1.0
CA A:ALA69 4.2 17.4 1.0
CB A:GLU177 4.2 17.1 1.0
CB A:ASN73 4.2 20.8 1.0
N A:ALA69 4.3 17.4 1.0
CA A:GLU177 4.3 17.8 1.0
N A:GLU177 4.4 18.0 1.0
CA A:ARG68 4.5 17.6 1.0
C A:ALA69 4.5 17.5 1.0
CA A:ALA176 4.5 17.8 1.0
N A:VAL74 4.5 19.3 1.0
OE2 A:GLU177 4.5 18.8 1.0
CG A:GLU177 4.6 15.7 1.0
N A:ASP71 4.6 19.3 1.0
CB A:ASP71 4.7 20.4 1.0
CA A:VAL74 4.7 19.1 1.0
CB A:ARG68 4.8 16.8 1.0
N A:VAL83 4.8 18.4 1.0
O A:ALA69 4.9 17.7 1.0
N A:VAL70 4.9 17.3 1.0

Reference:

S.C.Feil, S.Lawrence, T.D.Mulhern, J.K.Holien, E.M.Hotze, S.Farrand, R.K.Tweten, M.W.Parker. Structure of the Lectin Regulatory Domain of the Cholesterol-Dependent Cytolysin Lectinolysin Reveals the Basis For Its Lewis Antigen Specificity. Structure V. 20 248 2012.
ISSN: ISSN 0969-2126
PubMed: 22325774
DOI: 10.1016/J.STR.2011.11.017
Page generated: Tue Jul 8 14:11:01 2025

Last articles

Mg in 5DS5
Mg in 5DRZ
Mg in 5DRI
Mg in 5DRC
Mg in 5DRD
Mg in 5DQL
Mg in 5DR2
Mg in 5DQZ
Mg in 5DQK
Mg in 5DOU
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy