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Calcium in PDB 3lip: Open Conformation of Pseudomonas Cepacia Lipase

Enzymatic activity of Open Conformation of Pseudomonas Cepacia Lipase

All present enzymatic activity of Open Conformation of Pseudomonas Cepacia Lipase:
3.1.1.3;

Protein crystallography data

The structure of Open Conformation of Pseudomonas Cepacia Lipase, PDB code: 3lip was solved by D.A.Lang, D.Schomburg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 91.300, 47.300, 85.400, 90.00, 121.40, 90.00
R / Rfree (%) 18.8 / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Open Conformation of Pseudomonas Cepacia Lipase (pdb code 3lip). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Open Conformation of Pseudomonas Cepacia Lipase, PDB code: 3lip:

Calcium binding site 1 out of 1 in 3lip

Go back to Calcium Binding Sites List in 3lip
Calcium binding site 1 out of 1 in the Open Conformation of Pseudomonas Cepacia Lipase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Open Conformation of Pseudomonas Cepacia Lipase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca321

b:2.0
occ:1.00
O A:VAL296 2.1 6.8 1.0
O A:GLN292 2.2 6.1 1.0
O A:HOH452 2.3 5.0 1.0
OD1 A:ASP288 2.4 4.8 1.0
OD2 A:ASP242 2.4 4.1 1.0
O A:HOH467 2.5 3.4 1.0
C A:GLN292 3.2 6.1 1.0
C A:VAL296 3.3 6.8 1.0
CG A:ASP288 3.6 4.8 1.0
N A:LEU293 3.6 8.9 1.0
CG A:ASP242 3.6 4.1 1.0
CA A:ARG297 3.9 8.6 1.0
N A:ARG297 4.1 8.6 1.0
CA A:ASP288 4.3 4.9 1.0
OG A:SER244 4.3 6.8 1.0
OD2 A:ASP288 4.3 4.8 1.0
N A:ASP288 4.3 4.9 1.0
OD1 A:ASN285 4.4 5.2 1.0
CB A:ARG297 4.4 19.4 1.0
O A:HOH474 4.4 9.5 1.0
CA A:VAL296 4.4 6.8 1.0
OD1 A:ASP242 4.5 4.1 1.0
CB A:ASP288 4.5 4.8 1.0
CB A:ASP242 4.5 4.1 1.0
CA A:GLN292 4.6 6.1 1.0
ND2 A:ASN285 4.6 5.2 1.0
OG1 A:THR245 4.7 6.0 1.0
C A:LEU287 4.8 4.5 1.0
CB A:VAL296 4.8 5.2 1.0
N A:VAL296 4.8 6.8 1.0
N A:GLN292 4.9 6.1 1.0
O A:LEU287 5.0 4.5 1.0
CG A:ASN285 5.0 5.2 1.0

Reference:

J.D.Schrag, Y.Li, M.Cygler, D.Lang, T.Burgdorf, H.J.Hecht, R.Schmid, D.Schomburg, T.J.Rydel, J.D.Oliver, L.C.Strickland, C.M.Dunaway, S.B.Larson, J.Day, A.Mcpherson. The Open Conformation of A Pseudomonas Lipase. Structure V. 5 187 1997.
ISSN: ISSN 0969-2126
PubMed: 9032074
DOI: 10.1016/S0969-2126(97)00178-0
Page generated: Sat Jul 13 13:05:36 2024

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