Calcium in PDB 3lll: Crystal Structure of Mouse PACSIN2 F-Bar Domain

The structure of Crystal Structure of Mouse PACSIN2 F-Bar Domain, PDB code: 3lll was solved by M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.20 / 3.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	104.390, 106.400, 125.000, 90.00, 90.00, 90.00
R / Rfree (%)	25.6 / 29.7

The structure of Crystal Structure of Mouse PACSIN2 F-Bar Domain also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of Mouse PACSIN2 F-Bar Domain (pdb code 3lll). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Mouse PACSIN2 F-Bar Domain, PDB code: 3lll:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Mouse PACSIN2 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mouse PACSIN2 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:0.5 occ:1.00 O A:GLN76 2.9 73.1 1.0 O A:VAL71 2.9 66.2 1.0 O A:GLY74 3.0 99.5 1.0 OE1 A:GLU81 3.1 73.6 1.0 O A:GLU72 3.1 0.4 1.0 CE2 A:TYR77 3.4 96.9 1.0 CD2 A:TYR77 3.5 94.2 1.0 C A:GLU72 3.5 0.0 1.0 CD A:GLU81 3.6 72.5 1.0 CA A:GLU72 3.6 0.0 1.0 C A:GLN76 3.7 72.6 1.0 CZ A:TYR77 3.8 98.8 1.0 CG A:TYR77 3.9 93.3 1.0 C A:VAL71 3.9 65.3 1.0 OE2 A:GLU81 4.0 74.2 1.0 C A:GLY74 4.1 96.5 1.0 CE1 A:TYR77 4.2 98.0 1.0 N A:GLY74 4.2 98.1 1.0 N A:GLU72 4.2 0.4 1.0 N A:GLN76 4.3 72.4 1.0 CD1 A:TYR77 4.3 95.2 1.0 N A:TYR77 4.4 85.2 1.0 N A:LYS73 4.4 79.3 1.0 OH A:TYR77 4.4 0.0 1.0 CA A:TYR77 4.4 87.1 1.0 CG A:GLU81 4.5 69.3 1.0 CA A:GLN76 4.5 69.5 1.0 CA A:GLY74 4.7 95.1 1.0 CB A:TYR77 4.8 91.0 1.0 C A:LYS73 4.8 83.1 1.0 CB A:GLU72 4.9 0.3 1.0 C A:PRO75 5.0 79.2 1.0 CG A:GLU72 5.0 0.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Mouse PACSIN2 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Mouse PACSIN2 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca500 b:71.1 occ:1.00 O B:GLY74 2.9 0.1 1.0 O B:VAL71 3.0 72.4 1.0 O B:GLN76 3.0 60.6 1.0 O B:GLU72 3.1 86.1 1.0 OE1 B:GLU81 3.2 75.2 1.0 CD B:GLU81 3.3 72.6 1.0 CD2 B:TYR77 3.4 0.8 1.0 CE2 B:TYR77 3.4 0.3 1.0 C B:GLN76 3.4 59.2 1.0 OE2 B:GLU81 3.5 72.4 1.0 C B:GLY74 3.6 0.1 1.0 CG B:TYR77 3.8 99.0 1.0 N B:GLN76 3.8 58.9 1.0 CZ B:TYR77 3.8 0.2 1.0 N B:TYR77 3.9 92.1 1.0 C B:GLU72 4.0 86.6 1.0 C B:VAL71 4.1 73.5 1.0 CD1 B:TYR77 4.1 97.9 1.0 CA B:TYR77 4.1 94.3 1.0 CE1 B:TYR77 4.1 0.5 1.0 CG B:GLU81 4.2 69.7 1.0 CA B:GLY74 4.2 0.9 1.0 N B:GLY74 4.2 0.5 1.0 CA B:GLN76 4.2 57.0 1.0 C B:PRO75 4.3 60.8 1.0 CA B:GLU72 4.4 86.5 1.0 N B:PRO75 4.4 64.1 1.0 OH B:TYR77 4.5 0.9 1.0 CB B:TYR77 4.5 96.5 1.0 N B:GLU72 4.7 83.6 1.0 CA B:PRO75 4.7 62.8 1.0 C B:LYS73 4.8 86.2 1.0 CB B:GLU81 4.9 66.9 1.0 O B:PRO75 5.0 59.6 1.0 CB B:GLN76 5.0 55.6 1.0 N B:LYS73 5.0 89.9 1.0

M.Plomann, J.G.Wittmann, M.G.Rudolph. A Hinge in the Distal End of the Pacsin 2 F-Bar Domain May Contribute to Membrane-Curvature Sensing. J.Mol.Biol. V. 400 129 2010.
ISSN: ISSN 0022-2836
PubMed: 20471395
DOI: 10.1016/J.JMB.2010.05.008