Calcium in PDB 3lzk: The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021

The structure of The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021, PDB code: 3lzk was solved by K.Tan, X.Xu, H.Cui, A.Savchenko, A.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.60 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	62.773, 188.894, 67.736, 90.00, 115.17, 90.00
R / Rfree (%)	18.5 / 22.7

The binding sites of Calcium atom in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 (pdb code 3lzk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021, PDB code: 3lzk:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca339 b:42.3 occ:1.00 OE2 A:GLU141 2.4 49.5 1.0 OD2 A:ASP83 2.4 50.8 1.0 OD2 A:ASP170 2.5 50.1 1.0 OE2 A:GLU139 2.6 58.8 1.0 O A:HOH427 2.6 43.1 1.0 O A:HOH429 2.7 47.8 1.0 CG A:ASP83 3.4 51.4 1.0 CD A:GLU141 3.5 44.8 1.0 CG A:ASP170 3.5 52.2 1.0 CD A:GLU139 3.6 64.7 1.0 CB A:ASP170 3.8 46.0 1.0 OE1 A:GLU141 3.9 46.4 1.0 OD1 A:ASP83 3.9 50.0 1.0 NZ A:LYS191 4.0 58.0 1.0 CA A:GLY263 4.2 45.5 1.0 CE1 A:TYR113 4.2 43.6 1.0 CG A:GLU139 4.3 66.0 1.0 N A:THR264 4.4 45.5 1.0 OE1 A:GLU139 4.4 61.5 1.0 OH A:TYR113 4.5 46.8 1.0 CB A:ASP83 4.5 43.4 1.0 O A:GLY84 4.6 42.7 1.0 OD1 A:ASP170 4.6 50.0 1.0 C A:GLY263 4.7 43.7 1.0 CG A:GLU141 4.7 47.3 1.0 CZ A:TYR113 4.9 46.7 1.0 CB A:GLU139 4.9 58.9 1.0 O A:HOH387 5.0 53.2 1.0

Calcium binding site 2 out of 4 in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca339 b:54.0 occ:1.00 O B:HOH400 2.5 47.8 1.0 OE2 B:GLU141 2.5 51.0 1.0 OD2 B:ASP83 2.6 55.2 1.0 OD2 B:ASP170 2.6 65.5 1.0 O B:HOH388 2.8 59.6 1.0 OE2 B:GLU139 2.9 80.7 1.0 CD B:GLU139 3.1 79.3 1.0 NZ B:LYS191 3.3 59.9 1.0 CG B:ASP170 3.4 67.2 1.0 OE1 B:GLU139 3.4 84.9 1.0 CB B:ASP170 3.6 67.7 1.0 CG B:ASP83 3.7 49.5 1.0 CD B:GLU141 3.7 57.9 1.0 CG B:GLU139 3.7 72.9 1.0 OD1 B:ASP83 4.2 51.3 1.0 OE1 B:GLU141 4.3 59.9 1.0 OH B:TYR113 4.4 60.0 1.0 OD1 B:ASP170 4.4 63.5 1.0 CE1 B:TYR113 4.4 54.4 1.0 CB B:GLU139 4.5 63.1 1.0 CE B:LYS191 4.6 61.9 1.0 N B:THR264 4.6 57.6 1.0 CA B:GLY263 4.7 55.2 1.0 CG B:GLU141 4.8 54.4 1.0 CB B:ASP83 4.9 48.5 1.0 CZ B:TYR113 4.9 57.6 1.0 O B:GLY84 4.9 61.4 1.0

Calcium binding site 3 out of 4 in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca339 b:35.4 occ:1.00 OD2 C:ASP83 2.3 40.5 1.0 OE2 C:GLU141 2.4 34.5 1.0 O C:HOH354 2.5 40.6 1.0 OD2 C:ASP170 2.5 37.4 1.0 OE2 C:GLU139 2.5 39.1 1.0 CG C:ASP170 3.5 43.9 1.0 CD C:GLU141 3.5 37.8 1.0 CD C:GLU139 3.5 50.6 1.0 CG C:ASP83 3.5 39.5 1.0 CB C:ASP170 3.8 34.2 1.0 OE1 C:GLU141 4.0 36.3 1.0 NZ C:LYS191 4.1 53.5 1.0 CE1 C:TYR113 4.2 37.2 1.0 OD1 C:ASP83 4.2 37.4 1.0 CG C:GLU139 4.2 46.6 1.0 OE1 C:GLU139 4.3 56.3 1.0 OH C:TYR113 4.3 30.6 1.0 CA C:GLY263 4.4 38.8 1.0 N C:THR264 4.5 36.0 1.0 CB C:ASP83 4.6 32.2 1.0 O C:GLY84 4.6 35.5 1.0 OD1 C:ASP170 4.6 49.3 1.0 CG C:GLU141 4.8 29.0 1.0 CZ C:TYR113 4.8 36.0 1.0 CB C:GLU139 4.9 35.9 1.0 C C:GLY263 4.9 39.4 1.0

Calcium binding site 4 out of 4 in the The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca339 b:49.5 occ:1.00 OD2 D:ASP83 2.3 41.9 1.0 OE2 D:GLU141 2.4 49.1 1.0 OD2 D:ASP170 2.5 39.3 1.0 O D:HOH426 2.6 47.6 1.0 OE2 D:GLU139 2.9 82.2 1.0 CD D:GLU139 3.4 81.7 1.0 CG D:ASP170 3.5 49.2 1.0 CG D:ASP83 3.5 42.9 1.0 CD D:GLU141 3.5 47.1 1.0 OE1 D:GLU139 3.7 89.5 1.0 CB D:ASP170 3.8 44.5 1.0 OE1 D:GLU141 4.0 45.5 1.0 OD1 D:ASP83 4.1 41.4 1.0 NZ D:LYS191 4.2 57.1 1.0 CE1 D:TYR113 4.3 41.4 1.0 CA D:GLY263 4.3 43.4 1.0 CG D:GLU139 4.4 67.6 1.0 OH D:TYR113 4.4 45.7 1.0 N D:THR264 4.4 48.1 1.0 O D:GLY84 4.6 43.9 1.0 OD1 D:ASP170 4.6 47.5 1.0 CB D:ASP83 4.7 32.7 1.0 CG D:GLU141 4.7 45.0 1.0 CB D:GLU139 4.8 54.4 1.0 C D:GLY263 4.8 46.1 1.0 CZ D:TYR113 4.9 46.8 1.0

K.Tan, X.Xu, H.Cui, S.Chin, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of A Probably Aromatic Amino Acid Degradation Protein From Sinorhizobium Meliloti 1021 To Be Published.