Atomistry » Calcium » PDB 3mzo-3ngi » 3n08
Atomistry »
  Calcium »
    PDB 3mzo-3ngi »
      3n08 »

Calcium in PDB 3n08: Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx

Protein crystallography data

The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08 was solved by J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.19 / 1.25
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.115, 37.847, 55.101, 105.44, 96.50, 108.36
R / Rfree (%) 15.2 / 17.3

Other elements in 3n08:

The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx (pdb code 3n08). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 1 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca151

b:11.4
occ:0.88
O A:HOH348 2.4 13.2 1.0
O A:HOH251 2.4 14.8 1.0
OE1 A:GLU92 2.5 13.1 1.0
OE2 A:GLU92 2.6 15.8 1.0
CD A:GLU92 2.9 13.7 1.0
O A:HOH190 4.2 20.6 1.0
HA A:GLU92 4.4 12.8 1.0
CG A:GLU92 4.4 15.0 1.0
O A:HOH286 4.4 25.0 1.0
O A:GLY91 4.5 15.3 1.0
HG2 A:GLU92 4.8 17.9 1.0
O A:HOH439 4.8 24.5 1.0
HG3 A:GLU92 4.8 17.9 1.0

Calcium binding site 2 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 2 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca152

b:10.2
occ:0.67
O A:HOH252 2.4 16.0 1.0
OD2 A:ASP120 2.5 15.2 1.0
CG A:ASP120 3.5 16.6 1.0
OD1 A:ASP120 3.9 16.4 1.0
O A:HOH225 4.2 20.6 1.0
O A:HOH198 4.7 11.3 1.0
CB A:ASP120 4.8 15.0 1.0
HB2 A:ASP120 4.8 17.9 1.0

Calcium binding site 3 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 3 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca153

b:11.2
occ:0.88
O A:HOH194 2.3 13.8 1.0
O A:HOH308 2.5 17.2 1.0
HZ2 A:LYS17 3.5 22.2 1.0
HZ1 A:LYS17 4.1 22.2 1.0
NZ A:LYS17 4.1 18.5 1.0
HZ3 A:LYS17 4.3 22.2 1.0
OE2 A:GLU77 4.7 22.9 1.0
OE1 A:GLU77 4.8 19.6 1.0
O A:HOH202 4.8 14.8 1.0
O A:HOH186 4.9 22.4 1.0

Reference:

J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.25 Angstrom Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx To Be Published.
Page generated: Tue Jul 8 14:44:47 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy