Atomistry » Calcium » PDB 3ngw-3nuc » 3ngw
Atomistry »
  Calcium »
    PDB 3ngw-3nuc »
      3ngw »

Calcium in PDB 3ngw: Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189

Protein crystallography data

The structure of Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189, PDB code: 3ngw was solved by F.Forouhar, H.Neely, J.Seetharaman, P.Patel, R.Xiao, C.Ciccosanti, H.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.91 / 2.31
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 116.100, 116.100, 116.100, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189 (pdb code 3ngw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189, PDB code: 3ngw:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3ngw

Go back to Calcium Binding Sites List in 3ngw
Calcium binding site 1 out of 2 in the Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca209

b:57.4
occ:1.00
O A:HOH267 2.6 40.6 1.0
O A:HOH263 2.8 60.8 1.0
OD2 A:ASP136 2.8 58.0 1.0
O A:HOH262 2.9 34.9 1.0
OD1 A:ASP136 2.9 43.9 1.0
CG A:ASP136 3.2 51.0 1.0
O A:HOH264 4.4 38.4 1.0
O A:HOH220 4.7 40.9 1.0
CB A:ASP136 4.7 44.5 1.0
NH1 A:ARG81 4.8 42.3 1.0

Calcium binding site 2 out of 2 in 3ngw

Go back to Calcium Binding Sites List in 3ngw
Calcium binding site 2 out of 2 in the Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Molybdopterin-Guanine Dinucleotide Biosynthesis Protein A From Archaeoglobus Fulgidus, Northeast Structural Genomics Consortium Target GR189 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca210

b:46.5
occ:0.50
OD1 A:ASP184 2.7 35.0 1.0
OD2 A:ASP184 2.9 36.0 1.0
O A:HOH268 2.9 32.3 1.0
O A:HOH265 3.0 45.6 1.0
CG A:ASP184 3.1 40.9 1.0
O A:ASN178 4.1 31.6 1.0
OG1 A:THR181 4.4 29.5 1.0
CB A:ASP184 4.6 42.5 1.0
OD1 A:ASP183 4.8 39.8 1.0
C A:ASN178 5.0 34.0 1.0
OD1 A:ASN180 5.0 33.7 1.0

Reference:

F.Forouhar, H.Neely, J.Seetharaman, P.Patel, R.Xiao, C.Ciccosanti, H.Wang, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong. Northeast Structural Genomics Consortium Target GR189 To Be Published.
Page generated: Sat Jul 13 14:59:59 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy