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Calcium in PDB 3pp5: High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1

Protein crystallography data

The structure of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1, PDB code: 3pp5 was solved by J.Linkner, G.Witte, U.Curth, J.Faix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.39 / 1.50
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 39.140, 39.140, 118.190, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 18.2

Calcium Binding Sites:

The binding sites of Calcium atom in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 (pdb code 3pp5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1, PDB code: 3pp5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3pp5

Go back to Calcium Binding Sites List in 3pp5
Calcium binding site 1 out of 2 in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca71

b:9.2
occ:0.84
OE2 A:GLU15 2.4 13.6 1.0
O A:HOH114 2.5 13.0 1.0
OE2 A:GLU18 2.5 12.6 1.0
OE1 A:GLU18 2.7 12.2 1.0
CD A:GLU18 3.0 12.0 1.0
CD A:GLU15 3.5 13.0 1.0
CA A:CA72 3.8 10.1 0.8
CG A:GLU15 4.3 12.9 1.0
O A:HOH126 4.3 16.4 1.0
OE1 A:GLU15 4.4 15.0 1.0
O A:HOH160 4.4 34.1 1.0
CG A:GLU18 4.5 11.7 1.0
NE1 A:TRP11 4.5 15.2 1.0
CD1 A:TRP11 4.6 13.5 1.0
N A:GLU15 4.8 12.9 1.0
CA A:GLU15 4.9 12.1 1.0
CB A:ARG14 4.9 15.6 1.0
O A:HOH168 4.9 37.2 1.0

Calcium binding site 2 out of 2 in 3pp5

Go back to Calcium Binding Sites List in 3pp5
Calcium binding site 2 out of 2 in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca72

b:10.1
occ:0.82
OE1 A:GLU18 2.3 12.2 1.0
OE1 A:GLU15 2.5 15.0 1.0
OE2 A:GLU15 2.7 13.6 1.0
CD A:GLU15 3.0 13.0 1.0
CD A:GLU18 3.6 12.0 1.0
CA A:CA71 3.8 9.2 0.8
CB A:GLU18 4.1 11.2 1.0
CG A:GLU18 4.4 11.7 1.0
CG A:GLU15 4.4 12.9 1.0
OE2 A:GLU18 4.4 12.6 1.0
O A:HOH133 4.5 29.0 1.0
O A:HOH130 4.5 18.8 1.0
O A:HOH132 4.7 27.8 1.0
OD1 A:ASP19 4.8 23.4 1.0
CA A:GLU15 4.9 12.1 1.0
CB A:GLU15 5.0 14.1 1.0

Reference:

J.Linkner, G.Witte, T.Stradal, U.Curth, J.Faix. High-Resolution X-Ray Structure of the Trimeric Scar/Wave-Complex Precursor BRK1. Plos One V. 6 21327 2011.
ISSN: ESSN 1932-6203
PubMed: 21701600
DOI: 10.1371/JOURNAL.PONE.0021327
Page generated: Sat Jul 13 16:54:26 2024

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