Atomistry » Calcium » PDB 3q4y-3qgo » 3qf1
Atomistry »
  Calcium »
    PDB 3q4y-3qgo »
      3qf1 »

Calcium in PDB 3qf1: Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution

Enzymatic activity of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution, PDB code: 3qf1 was solved by N.Pandey, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.15 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.150, 80.180, 76.730, 90.00, 102.37, 90.00
R / Rfree (%) 23.5 / 25.6

Other elements in 3qf1:

The structure of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution also contains other interesting chemical elements:

Iodine (I) 10 atoms
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution (pdb code 3qf1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution, PDB code: 3qf1:

Calcium binding site 1 out of 1 in 3qf1

Go back to Calcium Binding Sites List in 3qf1
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:36.1
occ:1.00
 O A:PHE186 2.3 30.2 1.0
OD1 A:ASP110 2.3 37.2 1.0
OD1 A:ASP188 2.3 31.2 1.0
OG A:SER190 2.4 30.6 1.0
O A:ASP110 2.4 33.5 1.0
OG1 A:THR184 2.5 28.0 1.0
O A:THR184 2.6 26.1 1.0
CG A:ASP188 3.2 29.7 1.0
C A:ASP110 3.4 32.1 1.0
C A:THR184 3.5 27.9 1.0
C A:PHE186 3.5 31.6 1.0
CG A:ASP110 3.5 35.6 1.0
CB A:SER190 3.6 28.7 1.0
OD2 A:ASP188 3.7 33.4 1.0
CB A:THR184 3.7 28.9 1.0
CA A:THR184 4.0 28.5 1.0
N A:ASP188 4.0 31.8 1.0
N A:PHE186 4.1 29.7 1.0
N A:THR184 4.2 29.9 1.0
CA A:ASP110 4.2 30.9 1.0
N A:LEU111 4.3 32.8 1.0
CB A:ASP110 4.3 31.4 1.0
N A:SER190 4.3 29.1 1.0
C A:SER185 4.4 30.4 1.0
CA A:PHE186 4.4 28.8 1.0
CB A:ASP188 4.4 31.9 1.0
N A:LEU187 4.4 31.5 1.0
OD2 A:ASP110 4.4 35.3 1.0
CA A:LEU111 4.4 32.4 1.0
N A:SER185 4.5 29.0 1.0
CA A:LEU187 4.5 32.0 1.0
CA A:SER190 4.6 29.3 1.0
CD2 A:LEU111 4.7 21.2 1.0
CA A:ASP188 4.7 32.1 1.0
CG2 A:THR184 4.7 29.5 1.0
O A:SER185 4.8 32.5 1.0
CA A:SER185 4.8 28.4 1.0
C A:LEU187 4.8 31.7 1.0
C A:ASP188 4.9 32.2 1.0
CG2 A:VAL183 5.0 26.4 1.0

Reference:

N.Pandey, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution To Be Published.
Page generated: Sat Jul 13 17:31:14 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy