Atomistry » Calcium » PDB 3qgv-3r3t » 3qhq
Atomistry »
  Calcium »
    PDB 3qgv-3r3t »
      3qhq »

Calcium in PDB 3qhq: Structure of Crispr-Associated Protein CSN2

Enzymatic activity of Structure of Crispr-Associated Protein CSN2

All present enzymatic activity of Structure of Crispr-Associated Protein CSN2:
2.7.7.6;

Protein crystallography data

The structure of Structure of Crispr-Associated Protein CSN2, PDB code: 3qhq was solved by P.Ellinger, Z.Arslan, R.Wurm, B.Tschapek, K.Pfeffer, R.Wagner, L.Schmitt, U.Pul, S.H.Smits, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.57 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 75.300, 83.300, 110.400, 90.00, 109.40, 90.00
R / Rfree (%) 20.4 / 22.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Crispr-Associated Protein CSN2 (pdb code 3qhq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Structure of Crispr-Associated Protein CSN2, PDB code: 3qhq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 3qhq

Go back to Calcium Binding Sites List in 3qhq
Calcium binding site 1 out of 5 in the Structure of Crispr-Associated Protein CSN2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Crispr-Associated Protein CSN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca230

b:46.5
occ:1.00
 O A:LEU118 2.3 36.8 1.0
O A:CYS113 2.4 37.0 1.0
O A:HOH357 2.4 8.1 1.0
O A:ASN116 2.4 39.1 1.0
O A:HOH379 2.7 27.7 1.0
O A:LEU114 3.4 43.1 1.0
C A:CYS113 3.5 36.9 1.0
C A:ASN116 3.5 39.7 1.0
C A:LEU118 3.5 36.3 1.0
CA A:LEU114 3.6 40.4 1.0
C A:LEU114 3.7 41.8 1.0
N A:LEU114 4.0 38.2 1.0
O A:HOH311 4.0 10.7 1.0
CA A:ASN116 4.2 39.3 1.0
N A:LEU120 4.2 33.1 1.0
N A:ASN116 4.2 40.2 1.0
CB A:ASN116 4.2 37.2 1.0
N A:LEU118 4.2 38.3 1.0
CA A:ASP119 4.3 35.2 1.0
C A:GLU117 4.3 40.0 0.5
N A:ASP119 4.3 36.0 1.0
C A:GLU117 4.4 39.8 0.5
N A:GLU117 4.5 40.5 0.5
N A:GLU117 4.5 40.7 0.5
CA A:LEU118 4.5 37.2 1.0
O A:HOH354 4.6 13.4 1.0
O A:GLU117 4.6 40.1 0.5
N A:GLU115 4.6 41.9 1.0
CG A:LEU120 4.7 32.6 1.0
O A:GLU117 4.7 40.0 0.5
CA A:CYS113 4.7 35.1 1.0
CA A:GLU117 4.7 41.3 0.5
C A:GLU115 4.8 42.6 1.0
CB A:LEU120 4.8 31.6 1.0
CA A:GLU117 4.8 41.6 0.5
C A:ASP119 4.8 33.5 1.0
CD1 A:LEU120 4.8 32.9 1.0
CB A:LEU114 4.9 41.7 1.0

Calcium binding site 2 out of 5 in 3qhq

Go back to Calcium Binding Sites List in 3qhq
Calcium binding site 2 out of 5 in the Structure of Crispr-Associated Protein CSN2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Crispr-Associated Protein CSN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca231

b:24.7
occ:1.00
 O A:GLU124 2.3 26.0 1.0
O A:HOH356 2.4 10.4 1.0
OD1 A:ASP123 2.4 28.0 1.0
OE2 A:GLU129 2.5 23.1 1.0
O A:HOH253 2.5 14.5 1.0
OE1 A:GLU129 2.5 23.3 1.0
CD A:GLU129 2.8 23.8 1.0
C A:GLU124 3.6 26.3 1.0
CG A:ASP123 3.6 27.7 1.0
OD2 A:ASP123 4.1 29.1 1.0
N A:GLU124 4.1 27.3 1.0
OE2 A:GLU124 4.3 32.6 1.0
CG A:GLU129 4.4 23.0 1.0
CA A:GLU124 4.4 27.3 1.0
N A:ILE125 4.5 25.9 1.0
CA A:ILE125 4.5 25.1 1.0
O A:HOH293 4.7 17.3 1.0
CB A:ASP123 4.8 27.8 1.0
CG A:GLU124 4.8 28.5 1.0
N A:THR126 4.9 24.3 1.0
CG2 A:THR126 4.9 24.8 1.0
CD A:GLU124 4.9 31.6 1.0

Calcium binding site 3 out of 5 in 3qhq

Go back to Calcium Binding Sites List in 3qhq
Calcium binding site 3 out of 5 in the Structure of Crispr-Associated Protein CSN2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Crispr-Associated Protein CSN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca230

b:25.5
occ:1.00
 OD1 B:ASP143 2.3 25.7 1.0
OE2 B:GLU151 2.4 23.9 1.0
OE1 B:GLU139 2.5 26.3 1.0
O B:GLU139 2.5 27.0 1.0
O B:HOH336 2.5 4.2 1.0
C B:GLU139 3.4 27.2 1.0
CG B:ASP143 3.5 25.6 1.0
CD B:GLU151 3.5 26.0 1.0
CD B:GLU139 3.7 27.6 1.0
CB B:GLU139 4.0 29.8 1.0
OE1 B:GLU151 4.1 24.4 1.0
OD2 B:ASP143 4.1 24.8 1.0
N B:THR140 4.2 26.2 1.0
CA B:GLU139 4.3 28.8 1.0
CA B:THR140 4.3 25.1 1.0
CG B:GLU139 4.4 29.4 1.0
OE2 B:GLU139 4.6 28.1 1.0
CA B:ASP143 4.7 24.7 1.0
CB B:ASP143 4.7 23.6 1.0
OG B:SER142 4.7 28.7 1.0
O B:HOH275 4.7 2.9 1.0
N B:ASP143 4.7 25.2 1.0
OE1 B:GLU147 4.8 28.8 1.0
N B:GLU139 4.8 29.2 1.0
CG B:GLU151 4.8 28.0 1.0
C B:THR140 4.9 24.8 1.0

Calcium binding site 4 out of 5 in 3qhq

Go back to Calcium Binding Sites List in 3qhq
Calcium binding site 4 out of 5 in the Structure of Crispr-Associated Protein CSN2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Crispr-Associated Protein CSN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca231

b:27.1
occ:1.00
 O B:GLU124 2.3 27.2 1.0
O B:HOH297 2.3 14.4 1.0
O B:HOH340 2.4 14.8 1.0
OD1 B:ASP123 2.4 28.9 1.0
OE2 B:GLU129 2.4 25.1 1.0
OE1 B:GLU129 2.6 24.7 1.0
CD B:GLU129 2.9 24.8 1.0
C B:GLU124 3.5 27.4 1.0
CG B:ASP123 3.5 28.9 1.0
OD2 B:ASP123 4.0 28.4 1.0
N B:GLU124 4.0 27.9 1.0
OE2 B:GLU124 4.3 33.3 1.0
CA B:GLU124 4.4 28.2 1.0
CG B:GLU129 4.4 25.2 1.0
N B:ILE125 4.4 27.2 1.0
CA B:ILE125 4.5 26.9 1.0
CB B:ASP123 4.7 29.4 1.0
CG B:GLU124 4.7 31.1 1.0
CD B:GLU124 4.9 33.1 1.0
CG2 B:THR126 4.9 31.1 1.0
N B:THR126 4.9 28.4 1.0

Calcium binding site 5 out of 5 in 3qhq

Go back to Calcium Binding Sites List in 3qhq
Calcium binding site 5 out of 5 in the Structure of Crispr-Associated Protein CSN2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Crispr-Associated Protein CSN2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca232

b:43.1
occ:1.00
 O B:HOH327 2.3 10.3 1.0
O B:LEU118 2.3 27.5 1.0
O B:ASN116 2.3 26.1 1.0
O B:HOH334 2.4 18.6 1.0
O B:CYS113 2.5 25.1 1.0
O B:LEU114 3.1 28.4 1.0
C B:ASN116 3.4 26.4 1.0
C B:LEU118 3.4 28.3 1.0
C B:LEU114 3.5 27.7 1.0
C B:CYS113 3.6 25.1 1.0
CA B:LEU114 3.7 27.4 1.0
N B:ASN116 4.0 26.1 1.0
CA B:ASN116 4.1 26.1 1.0
N B:LEU118 4.1 27.4 1.0
N B:LEU114 4.1 25.9 1.0
CB B:ASN116 4.2 25.1 1.0
C B:GLU117 4.2 28.3 1.0
N B:ASP119 4.3 29.6 1.0
N B:LEU120 4.3 28.9 1.0
O B:HOH293 4.3 20.6 1.0
CA B:ASP119 4.3 30.3 1.0
CA B:LEU118 4.4 28.2 1.0
N B:GLU117 4.4 27.1 1.0
N B:GLU115 4.5 27.1 1.0
O B:GLU117 4.5 28.5 1.0
C B:GLU115 4.6 27.4 1.0
O B:HOH287 4.6 9.9 1.0
CA B:GLU117 4.7 28.2 1.0
CG B:LEU120 4.7 26.9 1.0
CA B:CYS113 4.8 24.2 1.0
C B:ASP119 4.8 29.7 1.0
CD1 B:LEU114 4.8 31.4 1.0
CD1 B:LEU120 4.8 25.8 1.0
CB B:LEU120 4.9 27.2 1.0
OD1 B:ASP119 5.0 35.1 1.0
OD1 B:ASN116 5.0 25.4 1.0

Reference:

P.Ellinger, Z.Arslan, R.Wurm, B.Tschapek, K.Pfeffer, R.Wagner, L.Schmitt, U.Pul, S.H.Smits. Structure of Crispr-Associated Protein CSN2 To Be Published.
Page generated: Tue Jul 8 15:59:32 2025

Last articles

K in 6UB7
K in 6U9P
K in 6U6C
K in 6U9L
K in 6U6D
K in 6U11
K in 6U98
K in 6TMX
K in 6U1K
K in 6U1J
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy