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Calcium in PDB 3qta: Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution, PDB code: 3qta was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.98 / 2.00
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.928, 89.928, 148.299, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution (pdb code 3qta). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution, PDB code: 3qta:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3qta

Go back to Calcium Binding Sites List in 3qta
Calcium binding site 1 out of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca300

b:43.8
occ:1.00
O A:HOH509 2.1 34.1 1.0
OD1 A:ASP168 2.3 41.8 1.0
O A:HOH387 2.3 33.2 1.0
O A:SER172 2.4 44.1 1.0
O A:ILE169 2.5 35.5 1.0
O A:HOH415 2.6 49.9 1.0
O A:HOH511 2.7 47.1 1.0
O A:HOH538 2.9 50.2 1.0
CG A:ASP168 3.5 37.9 1.0
C A:ILE169 3.6 34.7 1.0
C A:SER172 3.6 44.8 1.0
OD2 A:ASP168 3.9 44.5 1.0
N A:SER172 4.1 45.7 1.0
O A:HOH626 4.1 54.3 1.0
N A:ILE169 4.2 31.2 1.0
C A:ASP168 4.4 31.2 1.0
N A:LYS170 4.4 36.8 1.0
CA A:LYS170 4.4 40.2 1.0
CA A:SER172 4.4 45.1 1.0
O A:VAL174 4.4 34.8 1.0
CA A:ILE169 4.5 32.2 1.0
N A:GLU171 4.5 44.6 1.0
N A:ASP173 4.6 45.3 1.0
C A:LYS170 4.6 41.8 1.0
CA A:ASP173 4.7 45.8 1.0
O A:HOH463 4.7 53.7 1.0
CB A:ASP168 4.7 33.2 1.0
O A:ASP168 4.7 30.2 1.0
CA A:ASP168 4.9 31.6 1.0

Calcium binding site 2 out of 3 in 3qta

Go back to Calcium Binding Sites List in 3qta
Calcium binding site 2 out of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:31.5
occ:1.00
OD2 A:ASP201 2.4 27.4 1.0
O A:HOH381 2.4 37.6 1.0
O A:HOH344 2.4 29.1 1.0
O A:HOH489 2.5 28.8 1.0
OD2 A:ASP197 2.5 22.6 1.0
O A:HOH490 2.5 36.2 1.0
OD1 A:ASP197 2.6 19.9 1.0
OD1 A:ASP201 2.7 29.2 1.0
CG A:ASP197 2.9 19.8 1.0
CG A:ASP201 2.9 27.7 1.0
O A:HOH437 3.9 48.4 1.0
O A:HOH469 4.2 51.9 1.0
CB A:ASP197 4.4 18.8 1.0
O A:ASP197 4.4 20.2 1.0
O A:HOH376 4.4 39.8 1.0
CB A:ASP201 4.4 27.4 1.0
CE A:LYS9 4.6 17.4 1.0
C A:ASP197 4.8 19.6 1.0
O A:HOH352 4.9 33.0 1.0

Calcium binding site 3 out of 3 in 3qta

Go back to Calcium Binding Sites List in 3qta
Calcium binding site 3 out of 3 in the Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Chec-Like Protein (RRNAC0528) From Haloarcula Marismortui Atcc 43049 at 2.00 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca300

b:42.7
occ:1.00
O B:HOH507 2.2 31.2 1.0
O B:HOH341 2.2 40.1 1.0
OD1 B:ASP168 2.4 40.9 1.0
O B:SER172 2.4 42.3 1.0
O B:HOH527 2.5 45.8 1.0
O B:HOH379 2.5 45.4 1.0
O B:ILE169 2.5 38.8 1.0
CG B:ASP168 3.4 36.2 1.0
C B:SER172 3.6 41.9 1.0
C B:ILE169 3.7 37.8 1.0
OD2 B:ASP168 3.9 43.0 1.0
N B:ILE169 4.2 33.4 1.0
N B:SER172 4.2 43.1 1.0
O B:HOH579 4.2 60.7 1.0
O B:VAL174 4.4 33.9 1.0
O B:HOH577 4.4 58.1 1.0
C B:ASP168 4.5 32.8 1.0
CA B:LYS170 4.5 42.6 1.0
N B:LYS170 4.5 39.5 1.0
CA B:SER172 4.5 41.7 1.0
N B:ASP173 4.5 42.2 1.0
CA B:ILE169 4.5 35.1 1.0
CA B:ASP173 4.6 42.3 1.0
O B:HOH580 4.6 52.2 1.0
O B:HOH619 4.6 55.6 1.0
N B:GLU171 4.7 44.9 1.0
CB B:ASP168 4.7 32.9 1.0
O B:HOH562 4.7 52.4 1.0
C B:LYS170 4.7 43.1 1.0
O B:ASP168 4.8 34.1 1.0
CA B:ASP168 4.9 31.9 1.0
CB B:SER172 5.0 40.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 16:04:04 2025

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