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Calcium in PDB 3qvm: The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica

Protein crystallography data

The structure of The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica, PDB code: 3qvm was solved by A.U.Singer, O.Kagan, Y.Kim, A.M.Edwards, A.Joachimiak, A.Savchenko, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.77 / 2.00
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 123.067, 123.067, 49.218, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.5

Other elements in 3qvm:

The structure of The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica (pdb code 3qvm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica, PDB code: 3qvm:

Calcium binding site 1 out of 1 in 3qvm

Go back to Calcium Binding Sites List in 3qvm
Calcium binding site 1 out of 1 in the The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of OLEI00960, A Hydrolase From Oleispira Antarctica within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca286

b:32.7
occ:1.00
CG2 B:THR191 3.9 17.0 1.0
CA B:GLY187 4.4 14.7 1.0
O B:GLY187 4.4 14.8 1.0
C B:GLY187 4.8 14.5 1.0

Reference:

M.Kube, T.N.Chernikova, Y.Al-Ramahi, A.Beloqui, N.Lopez-Cortez, M.E.Guazzaroni, H.J.Heipieper, S.Klages, O.R.Kotsyurbenko, I.Langer, T.Y.Nechitaylo, H.Lunsdorf, M.Fernandez, S.Juarez, S.Ciordia, A.Singer, O.Kagan, O.Egorova, P.Alain Petit, P.Stogios, Y.Kim, A.Tchigvintsev, R.Flick, R.Denaro, M.Genovese, J.P.Albar, O.N.Reva, M.Martinez-Gomariz, H.Tran, M.Ferrer, A.Savchenko, A.F.Yakunin, M.M.Yakimov, O.V.Golyshina, R.Reinhardt, P.N.Golyshin. Genome Sequence and Functional Genomic Analysis of the Oil-Degrading Bacterium Oleispira Antarctica. Nat Commun V. 4 2156 2013.
ISSN: ESSN 2041-1723
PubMed: 23877221
DOI: 10.1038/NCOMMS3156
Page generated: Tue Jul 8 16:04:58 2025

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