Calcium in PDB 3rrw: Crystal Structure of the TL29 Protein From Arabidopsis Thaliana

The structure of Crystal Structure of the TL29 Protein From Arabidopsis Thaliana, PDB code: 3rrw was solved by E.Lundberg, P.Storm, W.P.Schroder, C.Funk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.17 / 2.50
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	92.350, 92.350, 143.460, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 27.6

The binding sites of Calcium atom in the Crystal Structure of the TL29 Protein From Arabidopsis Thaliana (pdb code 3rrw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the TL29 Protein From Arabidopsis Thaliana, PDB code: 3rrw:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of the TL29 Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the TL29 Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca271 b:36.3 occ:1.00 OD1 A:ASP42 2.3 32.3 1.0 OG A:SER58 2.3 43.7 1.0 OD2 A:ASP158 2.4 47.9 1.0 OD1 A:ASN56 2.4 36.6 1.0 O A:GLY54 2.5 37.1 1.0 O A:ASP42 2.6 35.7 1.0 CG A:ASP158 3.3 46.4 1.0 CG A:ASN56 3.4 39.6 1.0 C A:ASP42 3.4 34.1 1.0 CG A:ASP42 3.5 32.9 1.0 CB A:SER58 3.5 43.2 1.0 OG1 A:THR45 3.6 39.2 1.0 C A:GLY54 3.6 37.6 1.0 CA A:ASP42 3.7 33.2 1.0 OD1 A:ASP158 3.8 48.8 1.0 ND2 A:ASN56 3.9 41.2 1.0 N A:SER58 4.1 40.8 1.0 N A:ASN56 4.1 37.4 1.0 CB A:ASP42 4.2 32.0 1.0 N A:GLY54 4.2 42.2 1.0 CB A:ASP158 4.3 48.2 1.0 CA A:SER58 4.3 42.4 1.0 OE2 A:GLU64 4.4 39.7 1.0 OD2 A:ASP42 4.4 34.8 1.0 CA A:GLY54 4.5 39.5 1.0 N A:GLY57 4.5 38.2 1.0 N A:ILE59 4.6 38.3 1.0 N A:ALA55 4.6 36.8 1.0 CB A:ASN56 4.6 38.9 1.0 OE1 A:GLU64 4.6 45.5 1.0 N A:ALA43 4.7 34.6 1.0 CA A:ASN56 4.7 38.7 1.0 CB A:THR45 4.8 40.4 1.0 C A:GLY53 4.8 44.0 1.0 CA A:ALA55 4.8 35.9 1.0 CG2 A:THR45 4.8 37.7 1.0 C A:SER58 4.9 40.6 1.0 O A:ASN41 4.9 35.4 1.0 C A:ASN56 4.9 38.8 1.0 CD A:GLU64 5.0 37.8 1.0 C A:ALA55 5.0 36.9 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of the TL29 Protein From Arabidopsis Thaliana


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the TL29 Protein From Arabidopsis Thaliana within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca269 b:31.7 occ:0.50 OD2 B:ASP158 2.2 65.6 1.0 OD1 B:ASP42 2.4 60.9 1.0 O B:GLY54 2.4 63.5 1.0 OD1 B:ASN56 2.5 65.8 1.0 O B:ASP42 2.6 58.5 1.0 OG B:SER58 2.7 70.3 1.0 OG1 B:THR45 3.1 65.9 1.0 CG B:ASN56 3.3 66.4 1.0 CG B:ASP158 3.3 71.3 1.0 CG B:ASP42 3.4 58.9 1.0 C B:ASP42 3.5 55.9 1.0 C B:GLY54 3.5 61.5 1.0 ND2 B:ASN56 3.6 67.0 1.0 CB B:SER58 3.7 71.2 1.0 CA B:ASP42 3.7 56.1 1.0 N B:GLY54 4.0 66.9 1.0 N B:ASN56 4.0 60.6 1.0 OD1 B:ASP158 4.0 73.0 1.0 N B:SER58 4.0 67.8 1.0 CB B:ASP42 4.2 56.4 1.0 CB B:THR45 4.3 66.1 1.0 CA B:GLY54 4.3 62.8 1.0 OD2 B:ASP42 4.3 58.6 1.0 CG2 B:THR45 4.3 64.9 1.0 CB B:ASP158 4.3 73.7 1.0 CA B:SER58 4.4 71.2 1.0 OE2 B:GLU64 4.5 66.5 1.0 N B:ALA55 4.5 57.9 1.0 CB B:ASN56 4.5 65.7 1.0 CA B:ALA55 4.7 56.6 1.0 C B:GLY53 4.7 71.4 1.0 N B:GLY57 4.7 61.9 1.0 N B:ILE59 4.7 66.2 1.0 N B:ALA43 4.7 53.4 1.0 CA B:ASN56 4.7 62.9 1.0 C B:ALA55 4.9 58.8 1.0 O B:ASN41 4.9 56.3 1.0 CA B:GLY53 5.0 75.7 1.0 C B:ASN56 5.0 64.0 1.0 C B:SER58 5.0 70.7 1.0

E.Lundberg, P.Storm, W.P.Schroder, C.Funk. Crystal Structure of the TL29 Protein From Arabidopsis Thaliana: An Apx Homolog Without Peroxidase Activity. J.Struct.Biol. V. 176 24 2011.
ISSN: ISSN 1047-8477
PubMed: 21798352
DOI: 10.1016/J.JSB.2011.07.004