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Calcium in PDB 3s6f: Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution, PDB code: 3s6f was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.25 / 1.19
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 75.168, 102.524, 51.511, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 15

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution (pdb code 3s6f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution, PDB code: 3s6f:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3s6f

Go back to Calcium Binding Sites List in 3s6f
Calcium binding site 1 out of 2 in the Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca145

b:11.9
occ:0.60
O A:HOH385 2.2 15.0 1.0
O A:HOH211 2.3 13.0 1.0
O A:HOH305 2.4 36.1 1.0
O A:HOH388 2.4 22.2 1.0
O A:HOH231 2.5 21.1 1.0
O A:HOH221 2.5 16.4 1.0
O A:HOH242 2.6 22.8 1.0
O A:ASP44 4.1 11.6 1.0
O A:HOH273 4.2 27.6 1.0
O A:HOH334 4.3 33.7 1.0
CE2 A:PHE49 4.3 9.7 1.0
O A:ALA46 4.4 9.3 1.0
O A:HOH304 4.4 44.2 1.0
O A:HOH303 4.6 40.5 1.0
O A:ALA47 4.8 9.5 1.0
O A:LEU43 4.8 8.5 1.0
OD1 A:ASP44 4.8 16.8 1.0
C A:ASP44 4.9 8.6 1.0
O A:HOH205 5.0 10.4 1.0

Calcium binding site 2 out of 2 in 3s6f

Go back to Calcium Binding Sites List in 3s6f
Calcium binding site 2 out of 2 in the Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Acetyltransferase (DR_1678) From Deinococcus Radiodurans R1 at 1.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:15.5
occ:1.00
O A:HOH389 2.3 24.5 1.0
O A:SER86 2.4 12.2 1.0
O A:HOH243 2.4 14.9 0.5
O A:HOH390 2.4 24.7 1.0
OG A:SER86 2.4 15.6 1.0
O A:HOH391 2.4 21.1 1.0
CB A:SER86 3.4 12.3 1.0
C A:SER86 3.4 11.3 1.0
CA A:SER86 3.9 11.2 1.0
O9A A:COA200 4.1 37.8 0.5
O9A A:COA200 4.4 19.6 0.5
O A:HOH222 4.5 16.1 1.0
O A:HOH342 4.6 37.1 1.0
N A:LEU87 4.6 11.3 1.0
O8A A:COA200 4.7 36.6 0.5
O8A A:COA200 4.7 15.6 0.5
O A:HOH316 4.9 32.5 1.0
P3B A:COA200 5.0 37.0 0.5

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Tue Jul 8 16:30:36 2025

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